Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 112247 | 1.11 | 0.002063 |
Target: 5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3' miRNA: 3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 9434 | 1.11 | 0.002063 |
Target: 5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3' miRNA: 3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 67905 | 0.8 | 0.220402 |
Target: 5'- gCCGGCCCAGUgGUcGCUCUU-CAGGACg -3' miRNA: 3'- -GGUCGGGUCGgUA-CGAGAAcGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 27904 | 0.79 | 0.268913 |
Target: 5'- gCCGGCCCGGCC--GCgCUUGCGGAGg -3' miRNA: 3'- -GGUCGGGUCGGuaCGaGAACGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 78795 | 0.76 | 0.3996 |
Target: 5'- gCCGGCCCguGGCCAUGUcgcgCUUGUAGuAGCc -3' miRNA: 3'- -GGUCGGG--UCGGUACGa---GAACGUC-UUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 64155 | 0.75 | 0.435721 |
Target: 5'- gCGGCCC-GCCAUGCaggccgCUUGCGcGGACg -3' miRNA: 3'- gGUCGGGuCGGUACGa-----GAACGU-CUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 78408 | 0.74 | 0.464014 |
Target: 5'- aCAGCUUGGCCA-GCUCgUUGCuGAGCa -3' miRNA: 3'- gGUCGGGUCGGUaCGAG-AACGuCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 14381 | 0.74 | 0.473657 |
Target: 5'- aCGGCCgCGGCCGUGgUggcCUUGCAGGAg -3' miRNA: 3'- gGUCGG-GUCGGUACgA---GAACGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 127941 | 0.74 | 0.473657 |
Target: 5'- aCGGCCCAGCCGcGCUCg---AGGACg -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaacgUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 100608 | 0.74 | 0.503165 |
Target: 5'- gCAGCCCGGCCAgGCUCggGCccuGGCg -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaaCGuc-UUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 96874 | 0.73 | 0.537534 |
Target: 5'- gCGGUCCGcgcuggggagggaccGCCGUGCUCgcGCGGGACu -3' miRNA: 3'- gGUCGGGU---------------CGGUACGAGaaCGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 106049 | 0.73 | 0.543686 |
Target: 5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3' miRNA: 3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 3236 | 0.73 | 0.543686 |
Target: 5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3' miRNA: 3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 39490 | 0.73 | 0.55399 |
Target: 5'- aCCAGCCC-GCCGcgcagGCUCccGguGAACa -3' miRNA: 3'- -GGUCGGGuCGGUa----CGAGaaCguCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 11566 | 0.72 | 0.56435 |
Target: 5'- cCCGGUCCGGCCccGCUCgcgGCGGc-- -3' miRNA: 3'- -GGUCGGGUCGGuaCGAGaa-CGUCuug -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 115775 | 0.72 | 0.574761 |
Target: 5'- gCCGGCUCGGCCAgagcGUUC--GCGGAGCc -3' miRNA: 3'- -GGUCGGGUCGGUa---CGAGaaCGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 70038 | 0.72 | 0.585216 |
Target: 5'- gCCAGCCgAGCCGcgGCUCgcucGCAGcuuAGCa -3' miRNA: 3'- -GGUCGGgUCGGUa-CGAGaa--CGUC---UUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 4610 | 0.72 | 0.606226 |
Target: 5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 63068 | 0.72 | 0.606226 |
Target: 5'- gCCAGCaCCAGCCA--CUCgucgccauggUGCGGGACc -3' miRNA: 3'- -GGUCG-GGUCGGUacGAGa---------ACGUCUUG- -5' |
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6668 | 3' | -54.8 | NC_001847.1 | + | 134086 | 0.72 | 0.606226 |
Target: 5'- aCAGCCCGgcGCCGccgcuUGCUCUggcgaGCAGAGg -3' miRNA: 3'- gGUCGGGU--CGGU-----ACGAGAa----CGUCUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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