miRNA display CGI


Results 41 - 60 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 34769 0.66 0.434699
Target:  5'- cGCGGcUGcgcGCCGcGGCCGCGgCGCGcGGc- -3'
miRNA:   3'- -CGCU-AC---CGGC-CCGGCGCgGCGC-CCuc -5'
6670 3' -66.1 NC_001847.1 + 10843 0.66 0.460325
Target:  5'- cGCGAcggcGGCgCGuGGCCgagGCGCgGCGGGc- -3'
miRNA:   3'- -CGCUa---CCG-GC-CCGG---CGCGgCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 28457 0.66 0.460325
Target:  5'- aGUGccuAUGGCCGccguGGCacgaCGCGCCGCGGa-- -3'
miRNA:   3'- -CGC---UACCGGC----CCG----GCGCGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 86039 0.66 0.426342
Target:  5'- uGCGcUGGuuGGGCgagGCGCUGgGGGc- -3'
miRNA:   3'- -CGCuACCggCCCGg--CGCGGCgCCCuc -5'
6670 3' -66.1 NC_001847.1 + 132184 0.66 0.460325
Target:  5'- gGCGcUGcgcGCCGaGGCgGcCGCCGCGcuGGAGg -3'
miRNA:   3'- -CGCuAC---CGGC-CCGgC-GCGGCGC--CCUC- -5'
6670 3' -66.1 NC_001847.1 + 73031 0.66 0.467294
Target:  5'- cGCGGcagcGGCCGcggacaaccugcuGGCgaagcaaCGCGCCGCGGGc- -3'
miRNA:   3'- -CGCUa---CCGGC-------------CCG-------GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 4418 0.66 0.451693
Target:  5'- cCGAcGGCgGcGaGCgCGCGCCGCaGGGAa -3'
miRNA:   3'- cGCUaCCGgC-C-CG-GCGCGGCG-CCCUc -5'
6670 3' -66.1 NC_001847.1 + 104224 0.66 0.44315
Target:  5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3'
miRNA:   3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 35900 0.66 0.434699
Target:  5'- gGCGgcGGCgUGGGaCgGCG-CGUGGGAGc -3'
miRNA:   3'- -CGCuaCCG-GCCC-GgCGCgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 70643 0.66 0.451693
Target:  5'- uGCGcgGGCUGgaugacguGGCCGCGCaucuGCuGGGGc -3'
miRNA:   3'- -CGCuaCCGGC--------CCGGCGCGg---CGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 68971 0.66 0.44315
Target:  5'- gGgGgcGGCCGGcGCCa-GCC-CGGGAGa -3'
miRNA:   3'- -CgCuaCCGGCC-CGGcgCGGcGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 77222 0.66 0.434699
Target:  5'- cGCGGgccGCCGGGCCcggacuugGCGCggucgCGCGGGc- -3'
miRNA:   3'- -CGCUac-CGGCCCGG--------CGCG-----GCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 81022 0.66 0.44315
Target:  5'- aGCGcAUGGgCGacgccGCCGCGgaCUGCGGGGGc -3'
miRNA:   3'- -CGC-UACCgGCc----CGGCGC--GGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 42599 0.66 0.44315
Target:  5'- gGgGGUGGUgacaGGGaCgGCGCCGcCGcGGAGg -3'
miRNA:   3'- -CgCUACCGg---CCC-GgCGCGGC-GC-CCUC- -5'
6670 3' -66.1 NC_001847.1 + 120074 0.66 0.460325
Target:  5'- gGCuccuGCCGaGCCGCGCgggGCGGGAGa -3'
miRNA:   3'- -CGcuacCGGCcCGGCGCGg--CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 62727 0.66 0.469045
Target:  5'- cGCGuugcGGCCGuGGCCGuCcCCGCGucGGGGc -3'
miRNA:   3'- -CGCua--CCGGC-CCGGC-GcGGCGC--CCUC- -5'
6670 3' -66.1 NC_001847.1 + 96543 0.66 0.460325
Target:  5'- cGCGccGGCUGugcaGCCGCGCgCGCGGu-- -3'
miRNA:   3'- -CGCuaCCGGCc---CGGCGCG-GCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 100518 0.66 0.434699
Target:  5'- uGUGGUGGgcugCGGGUCGCGgaGUGGGuGg -3'
miRNA:   3'- -CGCUACCg---GCCCGGCGCggCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 125807 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 18203 0.66 0.450835
Target:  5'- gGCGAggucucgGGCUGgcggucucucggcGGUCGUGCgCGCGGGuGg -3'
miRNA:   3'- -CGCUa------CCGGC-------------CCGGCGCG-GCGCCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.