miRNA display CGI


Results 21 - 40 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 100518 0.66 0.434699
Target:  5'- uGUGGUGGgcugCGGGUCGCGgaGUGGGuGg -3'
miRNA:   3'- -CGCUACCg---GCCCGGCGCggCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 65493 0.66 0.460325
Target:  5'- cGCGua--CCGGGUCGCGgCGCGGcuGGGa -3'
miRNA:   3'- -CGCuaccGGCCCGGCGCgGCGCC--CUC- -5'
6670 3' -66.1 NC_001847.1 + 104530 0.66 0.426342
Target:  5'- aCGAUcaGCCGccGCCGCGCCGCGGc-- -3'
miRNA:   3'- cGCUAc-CGGCc-CGGCGCGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 35504 0.66 0.451693
Target:  5'- cGCGGaGGCCacGGCgCGCGCCGagcgcauccuCGGcGAGg -3'
miRNA:   3'- -CGCUaCCGGc-CCG-GCGCGGC----------GCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 35900 0.66 0.434699
Target:  5'- gGCGgcGGCgUGGGaCgGCG-CGUGGGAGc -3'
miRNA:   3'- -CGCuaCCG-GCCC-GgCGCgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 81022 0.66 0.44315
Target:  5'- aGCGcAUGGgCGacgccGCCGCGgaCUGCGGGGGc -3'
miRNA:   3'- -CGC-UACCgGCc----CGGCGC--GGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 96543 0.66 0.460325
Target:  5'- cGCGccGGCUGugcaGCCGCGCgCGCGGu-- -3'
miRNA:   3'- -CGCuaCCGGCc---CGGCGCG-GCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 55741 0.66 0.451693
Target:  5'- aCGGUGGUCcGGCuCGCGCcCGCGcGGc- -3'
miRNA:   3'- cGCUACCGGcCCG-GCGCG-GCGC-CCuc -5'
6670 3' -66.1 NC_001847.1 + 87670 0.66 0.450835
Target:  5'- uGCGccgcAUGGcCCGGGCgCuggggcugcugcgGCGCCGCGGcGGc -3'
miRNA:   3'- -CGC----UACC-GGCCCG-G-------------CGCGGCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 6869 0.66 0.469045
Target:  5'- cGCGcgGGuaGGGCCuuGCCGa-GGAGc -3'
miRNA:   3'- -CGCuaCCggCCCGGcgCGGCgcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 70643 0.66 0.451693
Target:  5'- uGCGcgGGCUGgaugacguGGCCGCGCaucuGCuGGGGc -3'
miRNA:   3'- -CGCuaCCGGC--------CCGGCGCGg---CGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 10843 0.66 0.460325
Target:  5'- cGCGAcggcGGCgCGuGGCCgagGCGCgGCGGGc- -3'
miRNA:   3'- -CGCUa---CCG-GC-CCGG---CGCGgCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 43433 0.66 0.451693
Target:  5'- uGCuGcUGGCCGGcGUCGCGaCC-CGGGGc -3'
miRNA:   3'- -CG-CuACCGGCC-CGGCGC-GGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 131681 0.66 0.469045
Target:  5'- cGCcAUGGCCGcGCagaaCGCGCUGUGGGc- -3'
miRNA:   3'- -CGcUACCGGCcCG----GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 18203 0.66 0.450835
Target:  5'- gGCGAggucucgGGCUGgcggucucucggcGGUCGUGCgCGCGGGuGg -3'
miRNA:   3'- -CGCUa------CCGGC-------------CCGGCGCG-GCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 6338 0.66 0.451693
Target:  5'- cGCGGgugccCCGGcggcaaCCGCGCCGCGGGc- -3'
miRNA:   3'- -CGCUacc--GGCCc-----GGCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 15560 0.66 0.460325
Target:  5'- cGCGGccGUCGGGCCGCGgCCGCc---- -3'
miRNA:   3'- -CGCUacCGGCCCGGCGC-GGCGcccuc -5'
6670 3' -66.1 NC_001847.1 + 132184 0.66 0.460325
Target:  5'- gGCGcUGcgcGCCGaGGCgGcCGCCGCGcuGGAGg -3'
miRNA:   3'- -CGCuAC---CGGC-CCGgC-GCGGCGC--CCUC- -5'
6670 3' -66.1 NC_001847.1 + 42599 0.66 0.44315
Target:  5'- gGgGGUGGUgacaGGGaCgGCGCCGcCGcGGAGg -3'
miRNA:   3'- -CgCUACCGg---CCC-GgCGCGGC-GC-CCUC- -5'
6670 3' -66.1 NC_001847.1 + 104224 0.66 0.44315
Target:  5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3'
miRNA:   3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.