miRNA display CGI


Results 21 - 40 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 111680 0.77 0.090107
Target:  5'- cGCGAUGGCCGaGGCgGCGgaCGCGGcGAc -3'
miRNA:   3'- -CGCUACCGGC-CCGgCGCg-GCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 90746 0.77 0.090107
Target:  5'- gGCGcGUGGCCGGGCCcCGggaGCGGGAGc -3'
miRNA:   3'- -CGC-UACCGGCCCGGcGCgg-CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 52681 0.77 0.092373
Target:  5'- cGUGGccggGGCCGGGCC-CGCCGCGccuGGAGc -3'
miRNA:   3'- -CGCUa---CCGGCCCGGcGCGGCGC---CCUC- -5'
6670 3' -66.1 NC_001847.1 + 73184 0.77 0.092602
Target:  5'- cGCGgcGGCggagucggcccgcgCGGGCCGCGCCGCcgcugacgcggaggaGGGGGg -3'
miRNA:   3'- -CGCuaCCG--------------GCCCGGCGCGGCG---------------CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 80635 0.76 0.094693
Target:  5'- cCGAUGGCgacGGCgGCGCuCGCGGGAGa -3'
miRNA:   3'- cGCUACCGgc-CCGgCGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 95705 0.76 0.097068
Target:  5'- cGCGGggggcGGCgCGGGCCGCucuGgCGCGGGGGg -3'
miRNA:   3'- -CGCUa----CCG-GCCCGGCG---CgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 95651 0.76 0.097068
Target:  5'- cGCGGggggcGGCgCGGGCCGCucuGgCGCGGGGGg -3'
miRNA:   3'- -CGCUa----CCG-GCCCGGCG---CgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 95759 0.76 0.097068
Target:  5'- cGCGGggggcGGCgCGGGCCGCucuGgCGCGGGGGg -3'
miRNA:   3'- -CGCUa----CCG-GCCCGGCG---CgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 10130 0.76 0.107143
Target:  5'- gGCGAgcgGGCCcGGCCguaGCGCgaGCGGGAGg -3'
miRNA:   3'- -CGCUa--CCGGcCCGG---CGCGg-CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 29896 0.76 0.107143
Target:  5'- gGCGgcGGCCcuGCCGgcCGCCGCGGGGGg -3'
miRNA:   3'- -CGCuaCCGGccCGGC--GCGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 100632 0.75 0.109811
Target:  5'- gGCGAccgccUGGCUgcggcgccaGGGCCGCGCUgcugcgGCGGGGGg -3'
miRNA:   3'- -CGCU-----ACCGG---------CCCGGCGCGG------CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 92343 0.75 0.118193
Target:  5'- aCGAUGGCCacggcacaGGGCgGCGCCGCGaGGc- -3'
miRNA:   3'- cGCUACCGG--------CCCGgCGCGGCGC-CCuc -5'
6670 3' -66.1 NC_001847.1 + 41628 0.75 0.118193
Target:  5'- cGUGAUGGCCGcGaGCggCGCGCCGgGGGGc -3'
miRNA:   3'- -CGCUACCGGC-C-CG--GCGCGGCgCCCUc -5'
6670 3' -66.1 NC_001847.1 + 32211 0.75 0.121117
Target:  5'- cCGcgGGCgGGGCCGgGgCGCGGGGc -3'
miRNA:   3'- cGCuaCCGgCCCGGCgCgGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 135024 0.75 0.121117
Target:  5'- cCGcgGGCgGGGCCGgGgCGCGGGGc -3'
miRNA:   3'- cGCuaCCGgCCCGGCgCgGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 34137 0.75 0.124109
Target:  5'- cGCGGUGGCCGccgcGGCgagCGCGCUGCGcGAGg -3'
miRNA:   3'- -CGCUACCGGC----CCG---GCGCGGCGCcCUC- -5'
6670 3' -66.1 NC_001847.1 + 14330 0.75 0.127168
Target:  5'- cGCGGUggGGCCGGGCgugguggcgGCGCCuGCGGGGa -3'
miRNA:   3'- -CGCUA--CCGGCCCGg--------CGCGG-CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 2508 0.75 0.128412
Target:  5'- cGCGAgGGCCGccucgcgcuuugcuGCCGgGCCGCGGGAc -3'
miRNA:   3'- -CGCUaCCGGCc-------------CGGCgCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 30021 0.74 0.129982
Target:  5'- aGCGcUGGCCGcgucuauGGCCGCgGCCGUGGGcGa -3'
miRNA:   3'- -CGCuACCGGC-------CCGGCG-CGGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 32107 0.74 0.130298
Target:  5'- cGCGAggcccgGGCuCGGGCCcccggGCGCCggggGCGGGGGc -3'
miRNA:   3'- -CGCUa-----CCG-GCCCGG-----CGCGG----CGCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.