miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 115057 1.08 0.000407
Target:  5'- aGCGAUGGCCGGGCCGCGCCGCGGGAGc -3'
miRNA:   3'- -CGCUACCGGCCCGGCGCGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 132791 0.83 0.032741
Target:  5'- cCGAcgcGGCCGGGCCgGCGCgGCGGGAGc -3'
miRNA:   3'- cGCUa--CCGGCCCGG-CGCGgCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 29978 0.83 0.032741
Target:  5'- cCGAcgcGGCCGGGCCgGCGCgGCGGGAGc -3'
miRNA:   3'- cGCUa--CCGGCCCGG-CGCGgCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 86634 0.82 0.037213
Target:  5'- aGCGuGUGGgCGGGCCGCGCCGCcccGGAGc -3'
miRNA:   3'- -CGC-UACCgGCCCGGCGCGGCGc--CCUC- -5'
6670 3' -66.1 NC_001847.1 + 124545 0.81 0.042282
Target:  5'- gGCGcgGGCCGGcGCCggcccGCGCgCGCGGGGGg -3'
miRNA:   3'- -CGCuaCCGGCC-CGG-----CGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 21732 0.81 0.042282
Target:  5'- gGCGcgGGCCGGcGCCggcccGCGCgCGCGGGGGg -3'
miRNA:   3'- -CGCuaCCGGCC-CGG-----CGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 116453 0.8 0.04926
Target:  5'- gGCGGUGaCgCGGGCCGUGCUGCGGGGc -3'
miRNA:   3'- -CGCUACcG-GCCCGGCGCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 93128 0.8 0.055922
Target:  5'- gGCGAagcUGGCCGGGCUGCcggcgccccCCGCGGGAa -3'
miRNA:   3'- -CGCU---ACCGGCCCGGCGc--------GGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 133973 0.79 0.061874
Target:  5'- gGCGGUGGCCuucugcgcGGCCGCGCUGCcGGAGc -3'
miRNA:   3'- -CGCUACCGGc-------CCGGCGCGGCGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 31160 0.79 0.061874
Target:  5'- gGCGGUGGCCuucugcgcGGCCGCGCUGCcGGAGc -3'
miRNA:   3'- -CGCUACCGGc-------CCGGCGCGGCGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 13912 0.79 0.065075
Target:  5'- aCGGUGGCUGGggcgcucgguGCCGCGCCGCGGcAGg -3'
miRNA:   3'- cGCUACCGGCC----------CGGCGCGGCGCCcUC- -5'
6670 3' -66.1 NC_001847.1 + 102799 0.78 0.068435
Target:  5'- cGCGggGGCUGGGCCcccuccgcgccGCGCCGCGcGGGc -3'
miRNA:   3'- -CGCuaCCGGCCCGG-----------CGCGGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 84227 0.78 0.068435
Target:  5'- cUGAcGGCCGGGgC-CGCCGCGGGGGa -3'
miRNA:   3'- cGCUaCCGGCCCgGcGCGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 3984 0.78 0.068435
Target:  5'- cCGggGGCCGGGCgCGCGgccCCGCGGGGc -3'
miRNA:   3'- cGCuaCCGGCCCG-GCGC---GGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 87000 0.78 0.073791
Target:  5'- cGCGccGGCCcggcgguuaccuGGGCCGCGCCucGCGGGAc -3'
miRNA:   3'- -CGCuaCCGG------------CCCGGCGCGG--CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 41378 0.78 0.073791
Target:  5'- aGCGgcGGCCGGGCCGCcgccggcaGCCGCGcGGc- -3'
miRNA:   3'- -CGCuaCCGGCCCGGCG--------CGGCGC-CCuc -5'
6670 3' -66.1 NC_001847.1 + 46209 0.78 0.075664
Target:  5'- gGCGGccgccGCCGGGCCG-GCCGCGGGGa -3'
miRNA:   3'- -CGCUac---CGGCCCGGCgCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 58579 0.77 0.087893
Target:  5'- uCGggGGCCGGGCCGCcgGCUGCGuGGGc -3'
miRNA:   3'- cGCuaCCGGCCCGGCG--CGGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 111680 0.77 0.090107
Target:  5'- cGCGAUGGCCGaGGCgGCGgaCGCGGcGAc -3'
miRNA:   3'- -CGCUACCGGC-CCGgCGCg-GCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 90746 0.77 0.090107
Target:  5'- gGCGcGUGGCCGGGCCcCGggaGCGGGAGc -3'
miRNA:   3'- -CGC-UACCGGCCCGGcGCgg-CGCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.