miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 761 0.67 0.401855
Target:  5'- gGCGA-GGCCGGcCCGcCGCCgGCGGc-- -3'
miRNA:   3'- -CGCUaCCGGCCcGGC-GCGG-CGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 807 0.66 0.460325
Target:  5'- aCGA-GGCgGGGgaCGaCGCCGCGGacGAGg -3'
miRNA:   3'- cGCUaCCGgCCCg-GC-GCGGCGCC--CUC- -5'
6670 3' -66.1 NC_001847.1 + 965 0.67 0.386035
Target:  5'- uGCGccGGCaccCGGGCCGgcggggcuucCGCCGCGGcGGc -3'
miRNA:   3'- -CGCuaCCG---GCCCGGC----------GCGGCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 1077 0.67 0.390738
Target:  5'- cGCGucccaguccacGCCGGgcGCCGCgGCCGCGGGcGg -3'
miRNA:   3'- -CGCuac--------CGGCC--CGGCG-CGGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 1411 0.66 0.44315
Target:  5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3'
miRNA:   3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 1539 0.69 0.281046
Target:  5'- cGCGAaGGCgccCGGGCCgaagacGCGCCGCGaGGc- -3'
miRNA:   3'- -CGCUaCCG---GCCCGG------CGCGGCGC-CCuc -5'
6670 3' -66.1 NC_001847.1 + 1666 0.7 0.274916
Target:  5'- cCGAcGGCCGGGCCGuCGC-GCGGc-- -3'
miRNA:   3'- cGCUaCCGGCCCGGC-GCGgCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 1717 0.66 0.426342
Target:  5'- aCGAUcaGCCGccGCCGCGCCGCGGc-- -3'
miRNA:   3'- cGCUAc-CGGCc-CGGCGCGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 2073 0.72 0.190464
Target:  5'- aGCGGUGGCggcgagcgccccgCGGGgcCCGCGCgGCGGcGGGc -3'
miRNA:   3'- -CGCUACCG-------------GCCC--GGCGCGgCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 2178 0.72 0.19091
Target:  5'- aGCgGGUGGuCCGcGaGCCGCGCCGCGaccucGGGGc -3'
miRNA:   3'- -CG-CUACC-GGC-C-CGGCGCGGCGC-----CCUC- -5'
6670 3' -66.1 NC_001847.1 + 2355 0.71 0.22969
Target:  5'- cGCGccGGCCcGGCCGCGUCgGCGGcGGc -3'
miRNA:   3'- -CGCuaCCGGcCCGGCGCGG-CGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 2508 0.75 0.128412
Target:  5'- cGCGAgGGCCGccucgcgcuuugcuGCCGgGCCGCGGGAc -3'
miRNA:   3'- -CGCUaCCGGCc-------------CGGCgCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 2587 0.7 0.245868
Target:  5'- cGCGGccGCCGcGGCCGCacgcgagcccGCCGCGccGGAGg -3'
miRNA:   3'- -CGCUacCGGC-CCGGCG----------CGGCGC--CCUC- -5'
6670 3' -66.1 NC_001847.1 + 2804 0.68 0.31942
Target:  5'- cGCGAgcgcGGCCGccaGCCGCGCCggcaccuccgccgGCGGGc- -3'
miRNA:   3'- -CGCUa---CCGGCc--CGGCGCGG-------------CGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 2879 0.71 0.214421
Target:  5'- cGCGcgGGCC--GCCGCGCCGCGcgucGAGu -3'
miRNA:   3'- -CGCuaCCGGccCGGCGCGGCGCc---CUC- -5'
6670 3' -66.1 NC_001847.1 + 2957 0.69 0.300084
Target:  5'- cGCGgcGGCCGccucGGCgcgcaGCGCCGcCGGGGc -3'
miRNA:   3'- -CGCuaCCGGC----CCGg----CGCGGC-GCCCUc -5'
6670 3' -66.1 NC_001847.1 + 3100 0.72 0.186488
Target:  5'- cGCGGccggcaGGCCGcGGCC-CGCCGCGGccGAGa -3'
miRNA:   3'- -CGCUa-----CCGGC-CCGGcGCGGCGCC--CUC- -5'
6670 3' -66.1 NC_001847.1 + 3257 0.68 0.320103
Target:  5'- gGCGGcagggGcGCCGGcGCCGCGCgGcCGGcGAGc -3'
miRNA:   3'- -CGCUa----C-CGGCC-CGGCGCGgC-GCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 3528 0.67 0.386035
Target:  5'- gGCcGUGGCCGacuacGGCCGCGagCGCGGcGGc -3'
miRNA:   3'- -CGcUACCGGC-----CCGGCGCg-GCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 3801 0.67 0.378281
Target:  5'- aGCGcacgcGGCCGGGCggcggcggCGCGCUGcCGGGc- -3'
miRNA:   3'- -CGCua---CCGGCCCG--------GCGCGGC-GCCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.