miRNA display CGI


Results 1 - 20 of 459 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 135024 0.75 0.121117
Target:  5'- cCGcgGGCgGGGCCGgGgCGCGGGGc -3'
miRNA:   3'- cGCuaCCGgCCCGGCgCgGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 134920 0.74 0.130298
Target:  5'- cGCGAggcccgGGCuCGGGCCcccggGCGCCggggGCGGGGGc -3'
miRNA:   3'- -CGCUa-----CCG-GCCCGG-----CGCGG----CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 134782 0.69 0.31332
Target:  5'- cGCGcgGGgCGGGCCccgggGCGCgaaGCccGGGAGg -3'
miRNA:   3'- -CGCuaCCgGCCCGG-----CGCGg--CG--CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 134532 0.71 0.214421
Target:  5'- uGUGGUGGUacaCGGGgCGCGUCGuCGGGcAGg -3'
miRNA:   3'- -CGCUACCG---GCCCgGCGCGGC-GCCC-UC- -5'
6670 3' -66.1 NC_001847.1 + 134530 0.73 0.165711
Target:  5'- gGCGcgGGCCGcGcGCCGCugcggagcgGCCGCGGaGGGc -3'
miRNA:   3'- -CGCuaCCGGC-C-CGGCG---------CGGCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 134371 0.7 0.240373
Target:  5'- aCGA-GGCCGGcGCCGCcgGCgGCGGGc- -3'
miRNA:   3'- cGCUaCCGGCC-CGGCG--CGgCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 134263 0.77 0.090107
Target:  5'- gGCGGccccGGCgCGGGCCGcCGCCGCGcguGGAGg -3'
miRNA:   3'- -CGCUa---CCG-GCCCGGC-GCGGCGC---CCUC- -5'
6670 3' -66.1 NC_001847.1 + 134214 0.73 0.154264
Target:  5'- gGCGcgGGCuCGGGCUucccgGCGCCgGCGGGcGg -3'
miRNA:   3'- -CGCuaCCG-GCCCGG-----CGCGG-CGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 134212 0.69 0.31332
Target:  5'- cGCGcgGGCCGaGGgCG-GCgGUGGGAa -3'
miRNA:   3'- -CGCuaCCGGC-CCgGCgCGgCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 134073 0.7 0.262979
Target:  5'- gGCG-UGGaCUGGGaCGCGgaccagggcCCGCGGGAGa -3'
miRNA:   3'- -CGCuACC-GGCCCgGCGC---------GGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 133973 0.79 0.061874
Target:  5'- gGCGGUGGCCuucugcgcGGCCGCGCUGCcGGAGc -3'
miRNA:   3'- -CGCUACCGGc-------CCGGCGCGGCGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 133906 0.69 0.31332
Target:  5'- uGCGGccgguguaccUGGCCugcGGGCgGCGCgCGCuGGAGc -3'
miRNA:   3'- -CGCU----------ACCGG---CCCGgCGCG-GCGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 133854 0.67 0.418081
Target:  5'- gGCGAggcGGCCaGccaCCGCGCCGCcaaccgcuGGGGGc -3'
miRNA:   3'- -CGCUa--CCGGcCc--GGCGCGGCG--------CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 133605 0.73 0.17376
Target:  5'- gGCGGgcgGGCuUGGGCggcacaaGCGCgCGCGGGGGg -3'
miRNA:   3'- -CGCUa--CCG-GCCCGg------CGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 133214 0.73 0.154264
Target:  5'- gGCGGcccgagUGGCC--GCCGCGCCGCGGcGGGc -3'
miRNA:   3'- -CGCU------ACCGGccCGGCGCGGCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 133180 0.71 0.224501
Target:  5'- uGCGcgGGCgCGGGCUGCcCuCGCuGGAGg -3'
miRNA:   3'- -CGCuaCCG-GCCCGGCGcG-GCGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 133032 0.68 0.362341
Target:  5'- gGCGcUGGCCGagaucgcGGcCCGcCGCCGCGcGGGc -3'
miRNA:   3'- -CGCuACCGGC-------CC-GGC-GCGGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 132791 0.83 0.032741
Target:  5'- cCGAcgcGGCCGGGCCgGCGCgGCGGGAGc -3'
miRNA:   3'- cGCUa--CCGGCCCGG-CGCGgCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 132709 0.74 0.133498
Target:  5'- gGCGgcGGCCcuGCCGgcCGCCGCGGGGGc -3'
miRNA:   3'- -CGCuaCCGGccCGGC--GCGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 132671 0.67 0.418081
Target:  5'- aCGgcGGCgGGGgCGcCGCCGCccgcucgaucGGGAGc -3'
miRNA:   3'- cGCuaCCGgCCCgGC-GCGGCG----------CCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.