miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 106819 0.74 0.133498
Target:  5'- cGCGggGcGCCGGGCCcgGCGCCcgccucucGCGGGGc -3'
miRNA:   3'- -CGCuaC-CGGCCCGG--CGCGG--------CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 10130 0.76 0.107143
Target:  5'- gGCGAgcgGGCCcGGCCguaGCGCgaGCGGGAGg -3'
miRNA:   3'- -CGCUa--CCGGcCCGG---CGCGg-CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 100632 0.75 0.109811
Target:  5'- gGCGAccgccUGGCUgcggcgccaGGGCCGCGCUgcugcgGCGGGGGg -3'
miRNA:   3'- -CGCU-----ACCGG---------CCCGGCGCGG------CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 41628 0.75 0.118193
Target:  5'- cGUGAUGGCCGcGaGCggCGCGCCGgGGGGc -3'
miRNA:   3'- -CGCUACCGGC-C-CG--GCGCGGCgCCCUc -5'
6670 3' -66.1 NC_001847.1 + 135024 0.75 0.121117
Target:  5'- cCGcgGGCgGGGCCGgGgCGCGGGGc -3'
miRNA:   3'- cGCuaCCGgCCCGGCgCgGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 34137 0.75 0.124109
Target:  5'- cGCGGUGGCCGccgcGGCgagCGCGCUGCGcGAGg -3'
miRNA:   3'- -CGCUACCGGC----CCG---GCGCGGCGCcCUC- -5'
6670 3' -66.1 NC_001847.1 + 2508 0.75 0.128412
Target:  5'- cGCGAgGGCCGccucgcgcuuugcuGCCGgGCCGCGGGAc -3'
miRNA:   3'- -CGCUaCCGGCc-------------CGGCgCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 30021 0.74 0.129982
Target:  5'- aGCGcUGGCCGcgucuauGGCCGCgGCCGUGGGcGa -3'
miRNA:   3'- -CGCuACCGGC-------CCGGCG-CGGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 134920 0.74 0.130298
Target:  5'- cGCGAggcccgGGCuCGGGCCcccggGCGCCggggGCGGGGGc -3'
miRNA:   3'- -CGCUa-----CCG-GCCCGG-----CGCGG----CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 80635 0.76 0.094693
Target:  5'- cCGAUGGCgacGGCgGCGCuCGCGGGAGa -3'
miRNA:   3'- cGCUACCGgc-CCGgCGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 52681 0.77 0.092373
Target:  5'- cGUGGccggGGCCGGGCC-CGCCGCGccuGGAGc -3'
miRNA:   3'- -CGCUa---CCGGCCCGGcGCGGCGC---CCUC- -5'
6670 3' -66.1 NC_001847.1 + 134263 0.77 0.090107
Target:  5'- gGCGGccccGGCgCGGGCCGcCGCCGCGcguGGAGg -3'
miRNA:   3'- -CGCUa---CCG-GCCCGGC-GCGGCGC---CCUC- -5'
6670 3' -66.1 NC_001847.1 + 132791 0.83 0.032741
Target:  5'- cCGAcgcGGCCGGGCCgGCGCgGCGGGAGc -3'
miRNA:   3'- cGCUa--CCGGCCCGG-CGCGgCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 124545 0.81 0.042282
Target:  5'- gGCGcgGGCCGGcGCCggcccGCGCgCGCGGGGGg -3'
miRNA:   3'- -CGCuaCCGGCC-CGG-----CGCG-GCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 116453 0.8 0.04926
Target:  5'- gGCGGUGaCgCGGGCCGUGCUGCGGGGc -3'
miRNA:   3'- -CGCUACcG-GCCCGGCGCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 93128 0.8 0.055922
Target:  5'- gGCGAagcUGGCCGGGCUGCcggcgccccCCGCGGGAa -3'
miRNA:   3'- -CGCU---ACCGGCCCGGCGc--------GGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 133973 0.79 0.061874
Target:  5'- gGCGGUGGCCuucugcgcGGCCGCGCUGCcGGAGc -3'
miRNA:   3'- -CGCUACCGGc-------CCGGCGCGGCGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 84227 0.78 0.068435
Target:  5'- cUGAcGGCCGGGgC-CGCCGCGGGGGa -3'
miRNA:   3'- cGCUaCCGGCCCgGcGCGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 102799 0.78 0.068435
Target:  5'- cGCGggGGCUGGGCCcccuccgcgccGCGCCGCGcGGGc -3'
miRNA:   3'- -CGCuaCCGGCCCGG-----------CGCGGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 46209 0.78 0.075664
Target:  5'- gGCGGccgccGCCGGGCCG-GCCGCGGGGa -3'
miRNA:   3'- -CGCUac---CGGCCCGGCgCGGCGCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.