miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 62727 0.66 0.469045
Target:  5'- cGCGuugcGGCCGuGGCCGuCcCCGCGucGGGGc -3'
miRNA:   3'- -CGCua--CCGGC-CCGGC-GcGGCGC--CCUC- -5'
6670 3' -66.1 NC_001847.1 + 52893 0.66 0.449121
Target:  5'- gGCGAUGGCCaguccuagguccgcGGGCaGCGgCuCGGGGc -3'
miRNA:   3'- -CGCUACCGG--------------CCCGgCGCgGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 71380 0.66 0.44315
Target:  5'- cGCGGUcuccgGGCCuGGcCCGCGCCGCcaGGcGGc -3'
miRNA:   3'- -CGCUA-----CCGGcCC-GGCGCGGCG--CC-CUc -5'
6670 3' -66.1 NC_001847.1 + 29978 0.83 0.032741
Target:  5'- cCGAcgcGGCCGGGCCgGCGCgGCGGGAGc -3'
miRNA:   3'- cGCUa--CCGGCCCGG-CGCGgCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 115493 0.66 0.468169
Target:  5'- cCGgcGGCCGGGCCcgcaagcggccgcGCGCCGacgccggcgcccCGGGc- -3'
miRNA:   3'- cGCuaCCGGCCCGG-------------CGCGGC------------GCCCuc -5'
6670 3' -66.1 NC_001847.1 + 73031 0.66 0.467294
Target:  5'- cGCGGcagcGGCCGcggacaaccugcuGGCgaagcaaCGCGCCGCGGGc- -3'
miRNA:   3'- -CGCUa---CCGGC-------------CCG-------GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 99203 0.66 0.460325
Target:  5'- cGCGA-GGC--GGCCGCGCgGCGGc-- -3'
miRNA:   3'- -CGCUaCCGgcCCGGCGCGgCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 807 0.66 0.460325
Target:  5'- aCGA-GGCgGGGgaCGaCGCCGCGGacGAGg -3'
miRNA:   3'- cGCUaCCGgCCCg-GC-GCGGCGCC--CUC- -5'
6670 3' -66.1 NC_001847.1 + 125492 0.66 0.451693
Target:  5'- cGCGAggacgcccGGCugcucgagcggCGGGCCgGCGCgGCGGcGGGc -3'
miRNA:   3'- -CGCUa-------CCG-----------GCCCGG-CGCGgCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 27681 0.66 0.451693
Target:  5'- cGCGgcGcGUCGGGCUgaggcgcgcgaGCGCCGgCGGGc- -3'
miRNA:   3'- -CGCuaC-CGGCCCGG-----------CGCGGC-GCCCuc -5'
6670 3' -66.1 NC_001847.1 + 87586 0.66 0.451693
Target:  5'- cGCGGccGCCGGGCucccCGCGCCcgccguGCuGGAGu -3'
miRNA:   3'- -CGCUacCGGCCCG----GCGCGG------CGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 100327 0.66 0.459459
Target:  5'- aGCGcccGGUCGGccuGCCGCgccagcgGCCGCGGGu- -3'
miRNA:   3'- -CGCua-CCGGCC---CGGCG-------CGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 28868 0.66 0.469045
Target:  5'- cGCcAUGGCCGcGCagaaCGCGCUGUGGGc- -3'
miRNA:   3'- -CGcUACCGGCcCG----GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 108070 0.66 0.451693
Target:  5'- aGCGugGGCgCGGuGCCGC-CCGgGGGGc -3'
miRNA:   3'- -CGCuaCCG-GCC-CGGCGcGGCgCCCUc -5'
6670 3' -66.1 NC_001847.1 + 4337 0.66 0.469045
Target:  5'- ----cGGCCGcGGCCGCcuccgccccgGCCGCGGc-- -3'
miRNA:   3'- cgcuaCCGGC-CCGGCG----------CGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 21887 0.66 0.459459
Target:  5'- cGCGGUGGgcgaCGagacgaaggagacGGCCGagGCCGCGGGcGa -3'
miRNA:   3'- -CGCUACCg---GC-------------CCGGCg-CGGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 51579 0.66 0.451693
Target:  5'- cGCGGc-GCCGGGgCa-GCCGuCGGGAGg -3'
miRNA:   3'- -CGCUacCGGCCCgGcgCGGC-GCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 109923 0.66 0.446556
Target:  5'- cGCGAc-GCCGaucaugcucuuugccGGCCGCG-CGCGGGGc -3'
miRNA:   3'- -CGCUacCGGC---------------CCGGCGCgGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 107191 0.66 0.469045
Target:  5'- aGCGA--GCUGGGCC-CGgaCGCGaGGAGg -3'
miRNA:   3'- -CGCUacCGGCCCGGcGCg-GCGC-CCUC- -5'
6670 3' -66.1 NC_001847.1 + 29371 0.66 0.460325
Target:  5'- gGCGcUGcgcGCCGaGGCgGcCGCCGCGcuGGAGg -3'
miRNA:   3'- -CGCuAC---CGGC-CCGgC-GCGGCGC--CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.