miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 59319 0.65 0.475198
Target:  5'- gGCGcgGcGCC-GGCgGCGCCGUaccagcccggcaucGGGGGc -3'
miRNA:   3'- -CGCuaC-CGGcCCGgCGCGGCG--------------CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 104530 0.66 0.426342
Target:  5'- aCGAUcaGCCGccGCCGCGCCGCGGc-- -3'
miRNA:   3'- cGCUAc-CGGCc-CGGCGCGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 42599 0.66 0.44315
Target:  5'- gGgGGUGGUgacaGGGaCgGCGCCGcCGcGGAGg -3'
miRNA:   3'- -CgCUACCGg---CCC-GgCGCGGC-GC-CCUC- -5'
6670 3' -66.1 NC_001847.1 + 68971 0.66 0.44315
Target:  5'- gGgGgcGGCCGGcGCCa-GCC-CGGGAGa -3'
miRNA:   3'- -CgCuaCCGGCC-CGGcgCGGcGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 35900 0.66 0.434699
Target:  5'- gGCGgcGGCgUGGGaCgGCG-CGUGGGAGc -3'
miRNA:   3'- -CGCuaCCG-GCCC-GgCGCgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 18203 0.66 0.450835
Target:  5'- gGCGAggucucgGGCUGgcggucucucggcGGUCGUGCgCGCGGGuGg -3'
miRNA:   3'- -CGCUa------CCGGC-------------CCGGCGCG-GCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 87670 0.66 0.450835
Target:  5'- uGCGccgcAUGGcCCGGGCgCuggggcugcugcgGCGCCGCGGcGGc -3'
miRNA:   3'- -CGC----UACC-GGCCCG-G-------------CGCGGCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 69264 0.66 0.434699
Target:  5'- cGCGGcUGGCgGcGGCCGCGggcuuccucuaCGCGGGc- -3'
miRNA:   3'- -CGCU-ACCGgC-CCGGCGCg----------GCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 104224 0.66 0.44315
Target:  5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3'
miRNA:   3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 125747 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 77222 0.66 0.434699
Target:  5'- cGCGGgccGCCGGGCCcggacuugGCGCggucgCGCGGGc- -3'
miRNA:   3'- -CGCUac-CGGCCCGG--------CGCG-----GCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 100518 0.66 0.434699
Target:  5'- uGUGGUGGgcugCGGGUCGCGgaGUGGGuGg -3'
miRNA:   3'- -CGCUACCg---GCCCGGCGCggCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 20273 0.66 0.451693
Target:  5'- gGCGA-GGUCGGcGCCGCG-CGUcGGAa -3'
miRNA:   3'- -CGCUaCCGGCC-CGGCGCgGCGcCCUc -5'
6670 3' -66.1 NC_001847.1 + 47561 0.66 0.434699
Target:  5'- cGCGggGaGCCcggcGGCCGCGCaCGCGccGAGg -3'
miRNA:   3'- -CGCuaC-CGGc---CCGGCGCG-GCGCc-CUC- -5'
6670 3' -66.1 NC_001847.1 + 86039 0.66 0.426342
Target:  5'- uGCGcUGGuuGGGCgagGCGCUGgGGGc- -3'
miRNA:   3'- -CGCuACCggCCCGg--CGCGGCgCCCuc -5'
6670 3' -66.1 NC_001847.1 + 81022 0.66 0.44315
Target:  5'- aGCGcAUGGgCGacgccGCCGCGgaCUGCGGGGGc -3'
miRNA:   3'- -CGC-UACCgGCc----CGGCGC--GGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 125807 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 37032 0.66 0.426342
Target:  5'- cGCGGaccUGGUCGuGGCCGCGCUcaUGGGc- -3'
miRNA:   3'- -CGCU---ACCGGC-CCGGCGCGGc-GCCCuc -5'
6670 3' -66.1 NC_001847.1 + 34769 0.66 0.434699
Target:  5'- cGCGGcUGcgcGCCGcGGCCGCGgCGCGcGGc- -3'
miRNA:   3'- -CGCU-AC---CGGC-CCGGCGCgGCGC-CCuc -5'
6670 3' -66.1 NC_001847.1 + 124723 0.66 0.44315
Target:  5'- -aGAcGGCCGaGGCCGCGggcgagGCGGaGAGa -3'
miRNA:   3'- cgCUaCCGGC-CCGGCGCgg----CGCC-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.