miRNA display CGI


Results 21 - 40 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 3930 0.69 0.306647
Target:  5'- cGCGcccGcGCUGGcGCCGCGgCGgGGGGGg -3'
miRNA:   3'- -CGCua-C-CGGCC-CGGCGCgGCgCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 3984 0.78 0.068435
Target:  5'- cCGggGGCCGGGCgCGCGgccCCGCGGGGc -3'
miRNA:   3'- cGCuaCCGGCCCG-GCGC---GGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 4166 0.72 0.181728
Target:  5'- aGCGAgcgGGCCuuguuuuGGGCCGCGCgccCGUGGGc- -3'
miRNA:   3'- -CGCUa--CCGG-------CCCGGCGCG---GCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 4337 0.66 0.469045
Target:  5'- ----cGGCCGcGGCCGCcuccgccccgGCCGCGGc-- -3'
miRNA:   3'- cgcuaCCGGC-CCGGCG----------CGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 4418 0.66 0.451693
Target:  5'- cCGAcGGCgGcGaGCgCGCGCCGCaGGGAa -3'
miRNA:   3'- cGCUaCCGgC-C-CG-GCGCGGCG-CCCUc -5'
6670 3' -66.1 NC_001847.1 + 4539 0.68 0.333996
Target:  5'- cGCGgcGGCCgcccgcGGGUgGCGCgGCGuGGAa -3'
miRNA:   3'- -CGCuaCCGG------CCCGgCGCGgCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 4969 0.69 0.287283
Target:  5'- ----aGGCCGGG-CGC-CCGCGGGGu -3'
miRNA:   3'- cgcuaCCGGCCCgGCGcGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 4991 0.7 0.251467
Target:  5'- uGCGgcGGCCGcGGCaaaGCGCgGCGGcGGc -3'
miRNA:   3'- -CGCuaCCGGC-CCGg--CGCGgCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 6338 0.66 0.451693
Target:  5'- cGCGGgugccCCGGcggcaaCCGCGCCGCGGGc- -3'
miRNA:   3'- -CGCUacc--GGCCc-----GGCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 6688 0.69 0.287283
Target:  5'- gGCGGccGGCCGGGCgCGCG-CGCaGGGc -3'
miRNA:   3'- -CGCUa-CCGGCCCG-GCGCgGCGcCCUc -5'
6670 3' -66.1 NC_001847.1 + 6869 0.66 0.469045
Target:  5'- cGCGcgGGuaGGGCCuuGCCGa-GGAGc -3'
miRNA:   3'- -CGCuaCCggCCCGGcgCGGCgcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 7239 0.71 0.219411
Target:  5'- aGCGGcUGGUCGGGUggcugugcggGCGCgGCGGGGGc -3'
miRNA:   3'- -CGCU-ACCGGCCCGg---------CGCGgCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 8125 0.69 0.31332
Target:  5'- cGCGGggccccagGGgCGGGCgGUGCUGCGcGAGg -3'
miRNA:   3'- -CGCUa-------CCgGCCCGgCGCGGCGCcCUC- -5'
6670 3' -66.1 NC_001847.1 + 8129 0.7 0.251467
Target:  5'- cGCGGggcGGgCGGGCCGacgaGCCucGCGGGGc -3'
miRNA:   3'- -CGCUa--CCgGCCCGGCg---CGG--CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 8467 0.68 0.363089
Target:  5'- gGCGccgGGCCggGGGCgGCGCuCGgcCGGGGGc -3'
miRNA:   3'- -CGCua-CCGG--CCCGgCGCG-GC--GCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 9235 0.67 0.386035
Target:  5'- cGCGggGGCgGGGCUGauugaccgcaaCGCUGCGGa-- -3'
miRNA:   3'- -CGCuaCCGgCCCGGC-----------GCGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 9587 0.68 0.341106
Target:  5'- ----cGGCCGcgaucgaGCCGCaGCCGCGGGGa -3'
miRNA:   3'- cgcuaCCGGCc------CGGCG-CGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 9742 0.67 0.409918
Target:  5'- cGCGAccGGgCGGGCCcUGCCcCGGGGc -3'
miRNA:   3'- -CGCUa-CCgGCCCGGcGCGGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 10051 0.72 0.20003
Target:  5'- cGCGAacgacaucuUGGCCgcgcGGGCCcaGCGCCccgccgcgcGCGGGAGc -3'
miRNA:   3'- -CGCU---------ACCGG----CCCGG--CGCGG---------CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 10130 0.76 0.107143
Target:  5'- gGCGAgcgGGCCcGGCCguaGCGCgaGCGGGAGg -3'
miRNA:   3'- -CGCUa--CCGGcCCGG---CGCGg-CGCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.