miRNA display CGI


Results 21 - 40 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 99203 0.66 0.460325
Target:  5'- cGCGA-GGC--GGCCGCGCgGCGGc-- -3'
miRNA:   3'- -CGCUaCCGgcCCGGCGCGgCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 807 0.66 0.460325
Target:  5'- aCGA-GGCgGGGgaCGaCGCCGCGGacGAGg -3'
miRNA:   3'- cGCUaCCGgCCCg-GC-GCGGCGCC--CUC- -5'
6670 3' -66.1 NC_001847.1 + 21887 0.66 0.459459
Target:  5'- cGCGGUGGgcgaCGagacgaaggagacGGCCGagGCCGCGGGcGa -3'
miRNA:   3'- -CGCUACCg---GC-------------CCGGCg-CGGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 100327 0.66 0.459459
Target:  5'- aGCGcccGGUCGGccuGCCGCgccagcgGCCGCGGGu- -3'
miRNA:   3'- -CGCua-CCGGCC---CGGCG-------CGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 99226 0.66 0.457727
Target:  5'- cGCGAccGCCGGugccauGCCGCucguugucgcagccGgCGCGGGAGu -3'
miRNA:   3'- -CGCUacCGGCC------CGGCG--------------CgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 4418 0.66 0.451693
Target:  5'- cCGAcGGCgGcGaGCgCGCGCCGCaGGGAa -3'
miRNA:   3'- cGCUaCCGgC-C-CG-GCGCGGCG-CCCUc -5'
6670 3' -66.1 NC_001847.1 + 125492 0.66 0.451693
Target:  5'- cGCGAggacgcccGGCugcucgagcggCGGGCCgGCGCgGCGGcGGGc -3'
miRNA:   3'- -CGCUa-------CCG-----------GCCCGG-CGCGgCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 103370 0.66 0.451693
Target:  5'- ----aGGCCGuguuGGCCgGCGCgCGCGGGuGc -3'
miRNA:   3'- cgcuaCCGGC----CCGG-CGCG-GCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 108070 0.66 0.451693
Target:  5'- aGCGugGGCgCGGuGCCGC-CCGgGGGGc -3'
miRNA:   3'- -CGCuaCCG-GCC-CGGCGcGGCgCCCUc -5'
6670 3' -66.1 NC_001847.1 + 27681 0.66 0.451693
Target:  5'- cGCGgcGcGUCGGGCUgaggcgcgcgaGCGCCGgCGGGc- -3'
miRNA:   3'- -CGCuaC-CGGCCCGG-----------CGCGGC-GCCCuc -5'
6670 3' -66.1 NC_001847.1 + 20273 0.66 0.451693
Target:  5'- gGCGA-GGUCGGcGCCGCG-CGUcGGAa -3'
miRNA:   3'- -CGCUaCCGGCC-CGGCGCgGCGcCCUc -5'
6670 3' -66.1 NC_001847.1 + 51579 0.66 0.451693
Target:  5'- cGCGGc-GCCGGGgCa-GCCGuCGGGAGg -3'
miRNA:   3'- -CGCUacCGGCCCgGcgCGGC-GCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 55741 0.66 0.451693
Target:  5'- aCGGUGGUCcGGCuCGCGCcCGCGcGGc- -3'
miRNA:   3'- cGCUACCGGcCCG-GCGCG-GCGC-CCuc -5'
6670 3' -66.1 NC_001847.1 + 35504 0.66 0.451693
Target:  5'- cGCGGaGGCCacGGCgCGCGCCGagcgcauccuCGGcGAGg -3'
miRNA:   3'- -CGCUaCCGGc-CCG-GCGCGGC----------GCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 43433 0.66 0.451693
Target:  5'- uGCuGcUGGCCGGcGUCGCGaCC-CGGGGc -3'
miRNA:   3'- -CG-CuACCGGCC-CGGCGC-GGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 130494 0.66 0.451693
Target:  5'- cGCGgcGcGUCGGGCUgaggcgcgcgaGCGCCGgCGGGc- -3'
miRNA:   3'- -CGCuaC-CGGCCCGG-----------CGCGGC-GCCCuc -5'
6670 3' -66.1 NC_001847.1 + 70643 0.66 0.451693
Target:  5'- uGCGcgGGCUGgaugacguGGCCGCGCaucuGCuGGGGc -3'
miRNA:   3'- -CGCuaCCGGC--------CCGGCGCGg---CGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 87586 0.66 0.451693
Target:  5'- cGCGGccGCCGGGCucccCGCGCCcgccguGCuGGAGu -3'
miRNA:   3'- -CGCUacCGGCCCG----GCGCGG------CGcCCUC- -5'
6670 3' -66.1 NC_001847.1 + 6338 0.66 0.451693
Target:  5'- cGCGGgugccCCGGcggcaaCCGCGCCGCGGGc- -3'
miRNA:   3'- -CGCUacc--GGCCc-----GGCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 87670 0.66 0.450835
Target:  5'- uGCGccgcAUGGcCCGGGCgCuggggcugcugcgGCGCCGCGGcGGc -3'
miRNA:   3'- -CGC----UACC-GGCCCG-G-------------CGCGGCGCC-CUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.