miRNA display CGI


Results 41 - 60 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 87670 0.66 0.450835
Target:  5'- uGCGccgcAUGGcCCGGGCgCuggggcugcugcgGCGCCGCGGcGGc -3'
miRNA:   3'- -CGC----UACC-GGCCCG-G-------------CGCGGCGCC-CUc -5'
6670 3' -66.1 NC_001847.1 + 52893 0.66 0.449121
Target:  5'- gGCGAUGGCCaguccuagguccgcGGGCaGCGgCuCGGGGc -3'
miRNA:   3'- -CGCUACCGG--------------CCCGgCGCgGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 109923 0.66 0.446556
Target:  5'- cGCGAc-GCCGaucaugcucuuugccGGCCGCG-CGCGGGGc -3'
miRNA:   3'- -CGCUacCGGC---------------CCGGCGCgGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 96332 0.66 0.44315
Target:  5'- nGCaAUGGCgGGGCCG-GCgGCGGc-- -3'
miRNA:   3'- -CGcUACCGgCCCGGCgCGgCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 71380 0.66 0.44315
Target:  5'- cGCGGUcuccgGGCCuGGcCCGCGCCGCcaGGcGGc -3'
miRNA:   3'- -CGCUA-----CCGGcCC-GGCGCGGCG--CC-CUc -5'
6670 3' -66.1 NC_001847.1 + 68971 0.66 0.44315
Target:  5'- gGgGgcGGCCGGcGCCa-GCC-CGGGAGa -3'
miRNA:   3'- -CgCuaCCGGCC-CGGcgCGGcGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 43654 0.66 0.44315
Target:  5'- cGCGAgGGCuCGGGUgGCccGCCGCaGGuGc -3'
miRNA:   3'- -CGCUaCCG-GCCCGgCG--CGGCGcCCuC- -5'
6670 3' -66.1 NC_001847.1 + 22994 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 1411 0.66 0.44315
Target:  5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3'
miRNA:   3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 81022 0.66 0.44315
Target:  5'- aGCGcAUGGgCGacgccGCCGCGgaCUGCGGGGGc -3'
miRNA:   3'- -CGC-UACCgGCc----CGGCGC--GGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 104224 0.66 0.44315
Target:  5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3'
miRNA:   3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 42599 0.66 0.44315
Target:  5'- gGgGGUGGUgacaGGGaCgGCGCCGcCGcGGAGg -3'
miRNA:   3'- -CgCUACCGg---CCC-GgCGCGGC-GC-CCUC- -5'
6670 3' -66.1 NC_001847.1 + 124723 0.66 0.44315
Target:  5'- -aGAcGGCCGaGGCCGCGggcgagGCGGaGAGa -3'
miRNA:   3'- cgCUaCCGGC-CCGGCGCgg----CGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125747 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 125807 0.66 0.44315
Target:  5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3'
miRNA:   3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 60022 0.66 0.44315
Target:  5'- gGCGG-GGcCCGGGCCuucucgggcaaGCGCCG-GGGc- -3'
miRNA:   3'- -CGCUaCC-GGCCCGG-----------CGCGGCgCCCuc -5'
6670 3' -66.1 NC_001847.1 + 16837 0.66 0.44315
Target:  5'- gGCGcgGGCaucgGGGCgGCGCUcgaggcgaGCGGGc- -3'
miRNA:   3'- -CGCuaCCGg---CCCGgCGCGG--------CGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 127336 0.66 0.442301
Target:  5'- cCGAggcGGCCGGcuGCCGCggcagggGCgGCGGGGc -3'
miRNA:   3'- cGCUa--CCGGCC--CGGCG-------CGgCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 35900 0.66 0.434699
Target:  5'- gGCGgcGGCgUGGGaCgGCG-CGUGGGAGc -3'
miRNA:   3'- -CGCuaCCG-GCCC-GgCGCgGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 34769 0.66 0.434699
Target:  5'- cGCGGcUGcgcGCCGcGGCCGCGgCGCGcGGc- -3'
miRNA:   3'- -CGCU-AC---CGGC-CCGGCGCgGCGC-CCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.