miRNA display CGI


Results 41 - 60 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 10843 0.66 0.460325
Target:  5'- cGCGAcggcGGCgCGuGGCCgagGCGCgGCGGGc- -3'
miRNA:   3'- -CGCUa---CCG-GC-CCGG---CGCGgCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 11321 0.67 0.378281
Target:  5'- cCGA-GGCCGGcgggcgGCUgGCGCCggaGCGGGAGc -3'
miRNA:   3'- cGCUaCCGGCC------CGG-CGCGG---CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 12065 0.72 0.177915
Target:  5'- uGCGGacGCCGaGGCCgcggaGCGCCGCGGGu- -3'
miRNA:   3'- -CGCUacCGGC-CCGG-----CGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 12904 0.67 0.409918
Target:  5'- cGCGGaaGCgCGcGCCGUgccGCCGCGGGGGc -3'
miRNA:   3'- -CGCUacCG-GCcCGGCG---CGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 13125 0.67 0.393893
Target:  5'- cGCGcgGG-CGGcGCCGCGCCGCc---- -3'
miRNA:   3'- -CGCuaCCgGCC-CGGCGCGGCGcccuc -5'
6670 3' -66.1 NC_001847.1 + 13237 0.68 0.326995
Target:  5'- cGCGAUGGCCagcgGGGCCa---CGCGGGcGg -3'
miRNA:   3'- -CGCUACCGG----CCCGGcgcgGCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 13374 0.7 0.274916
Target:  5'- cGCGAacGGCgcgcacgucCGGG-CGCGCCGCGGGc- -3'
miRNA:   3'- -CGCUa-CCG---------GCCCgGCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 13912 0.79 0.065075
Target:  5'- aCGGUGGCUGGggcgcucgguGCCGCGCCGCGGcAGg -3'
miRNA:   3'- cGCUACCGGCC----------CGGCGCGGCGCCcUC- -5'
6670 3' -66.1 NC_001847.1 + 13948 0.7 0.268894
Target:  5'- cGCGA--GCUGcGGCUGCGgcCCGUGGGAGc -3'
miRNA:   3'- -CGCUacCGGC-CCGGCGC--GGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 14133 0.72 0.186488
Target:  5'- gGCGAUGGgCGGGgcCCGCGCC-UGGGcGg -3'
miRNA:   3'- -CGCUACCgGCCC--GGCGCGGcGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 14159 0.74 0.136771
Target:  5'- aGCGgcGGCCGGGgCG-GCCGCgcuaaaggcacGGGAGg -3'
miRNA:   3'- -CGCuaCCGGCCCgGCgCGGCG-----------CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 14330 0.75 0.127168
Target:  5'- cGCGGUggGGCCGGGCgugguggcgGCGCCuGCGGGGa -3'
miRNA:   3'- -CGCUA--CCGGCCCGg--------CGCGG-CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 15015 0.67 0.370632
Target:  5'- cGCGGUggGGCCGcgcgaGCCGCgGCCGcCGGGcGa -3'
miRNA:   3'- -CGCUA--CCGGCc----CGGCG-CGGC-GCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 15560 0.66 0.460325
Target:  5'- cGCGGccGUCGGGCCGCGgCCGCc---- -3'
miRNA:   3'- -CGCUacCGGCCCGGCGC-GGCGcccuc -5'
6670 3' -66.1 NC_001847.1 + 15784 0.72 0.177915
Target:  5'- cCGgcGGCaaGcGCCGCGCgGCGGGAGg -3'
miRNA:   3'- cGCuaCCGgcC-CGGCGCGgCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 16762 0.71 0.234981
Target:  5'- cGCGA-GGCCGaugagaauGCCGCGCCGCacGGcGGGg -3'
miRNA:   3'- -CGCUaCCGGCc-------CGGCGCGGCG--CC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 16837 0.66 0.44315
Target:  5'- gGCGcgGGCaucgGGGCgGCGCUcgaggcgaGCGGGc- -3'
miRNA:   3'- -CGCuaCCGg---CCCGgCGCGG--------CGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 17791 0.7 0.274916
Target:  5'- ----cGGCgGGGCUuuGCucgGCCGCGGGGGg -3'
miRNA:   3'- cgcuaCCGgCCCGG--CG---CGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 18203 0.66 0.450835
Target:  5'- gGCGAggucucgGGCUGgcggucucucggcGGUCGUGCgCGCGGGuGg -3'
miRNA:   3'- -CGCUa------CCGGC-------------CCGGCGCG-GCGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 18256 0.67 0.401855
Target:  5'- -aGAUGGCCGcGaCCGCGgCGCGGc-- -3'
miRNA:   3'- cgCUACCGGCcC-GGCGCgGCGCCcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.