miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 56432 0.68 0.849623
Target:  5'- uCGCggaagaccgCCCGCAcucGCGUGCuGcCCGGCa -3'
miRNA:   3'- -GCGa--------GGGCGUu--UGCAUGuCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 20082 0.68 0.849623
Target:  5'- gGCUCCCGCGGc---GCGGcCCGGCc -3'
miRNA:   3'- gCGAGGGCGUUugcaUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 81892 0.68 0.849623
Target:  5'- gCGC-CCCGCcgAGGCGgcgccGCAG-CCAGCg -3'
miRNA:   3'- -GCGaGGGCG--UUUGCa----UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 99477 0.68 0.844737
Target:  5'- cCGCUUgcgucacgacgucggCCGCcgAGGCGgcGCGGUCCAGCg -3'
miRNA:   3'- -GCGAG---------------GGCG--UUUGCa-UGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 56865 0.68 0.84144
Target:  5'- cCGC-CUCGCAGagGCGagcagGCAGUCCAGgUg -3'
miRNA:   3'- -GCGaGGGCGUU--UGCa----UGUCAGGUCgA- -5'
6670 5' -54.7 NC_001847.1 + 33897 0.68 0.84144
Target:  5'- gCGUggCCGCGGGCGUGCAGgaccgCCuguGGCa -3'
miRNA:   3'- -GCGagGGCGUUUGCAUGUCa----GG---UCGa -5'
6670 5' -54.7 NC_001847.1 + 80244 0.68 0.84144
Target:  5'- aGCUCCCGgGaAACGUGCGccucgCCGGUg -3'
miRNA:   3'- gCGAGGGCgU-UUGCAUGUca---GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 105430 0.68 0.84144
Target:  5'- cCGCUCCCGCGcc---GCAGUCUcGCg -3'
miRNA:   3'- -GCGAGGGCGUuugcaUGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 132505 0.68 0.84144
Target:  5'- gGCg-CCGCAAGCGgcgacgGCGGUCCcGCc -3'
miRNA:   3'- gCGagGGCGUUUGCa-----UGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 5035 0.68 0.840611
Target:  5'- gCGCUCUCGUAcuCGUcccagcccgcgucGCGGUCgGGCg -3'
miRNA:   3'- -GCGAGGGCGUuuGCA-------------UGUCAGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 45650 0.68 0.83306
Target:  5'- gCGCUgCCGCAAuGCG-GCGGUUCAGgCUu -3'
miRNA:   3'- -GCGAgGGCGUU-UGCaUGUCAGGUC-GA- -5'
6670 5' -54.7 NC_001847.1 + 97433 0.68 0.83306
Target:  5'- gCGCgCCCaGCAGcagcgcgcACGUGacgaGGUCCAGCg -3'
miRNA:   3'- -GCGaGGG-CGUU--------UGCAUg---UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 64262 0.68 0.83306
Target:  5'- aGCggUCCGCAGGCGguuugUACAGccCCAGCg -3'
miRNA:   3'- gCGa-GGGCGUUUGC-----AUGUCa-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41996 0.68 0.824489
Target:  5'- cCGCcuuUCCCGCGgggGGCGccgGCAGcCCGGCc -3'
miRNA:   3'- -GCG---AGGGCGU---UUGCa--UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 26545 0.69 0.815737
Target:  5'- aCGUUUUCgGCGcGCGUGCGGUgCAGCa -3'
miRNA:   3'- -GCGAGGG-CGUuUGCAUGUCAgGUCGa -5'
6670 5' -54.7 NC_001847.1 + 62126 0.69 0.810402
Target:  5'- cCGCUgCCGCGGccugguuccgcgcccGCGcUGCGG-CCAGCUc -3'
miRNA:   3'- -GCGAgGGCGUU---------------UGC-AUGUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 41318 0.69 0.806811
Target:  5'- aGCUCgCGC-GGCGcaaAGUCCAGCg -3'
miRNA:   3'- gCGAGgGCGuUUGCaugUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 46925 0.69 0.806811
Target:  5'- gGCUCCgGCGAgGCGcuuuugGguGUCCGGCa -3'
miRNA:   3'- gCGAGGgCGUU-UGCa-----UguCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 43702 0.69 0.806811
Target:  5'- aCGCUCCCGCGcuuCGUcuGCgaAGUCC-GCg -3'
miRNA:   3'- -GCGAGGGCGUuu-GCA--UG--UCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 83773 0.69 0.805909
Target:  5'- gGCcUCCGCGAGCGUcaccgucACGGUCC-GCg -3'
miRNA:   3'- gCGaGGGCGUUUGCA-------UGUCAGGuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.