miRNA display CGI


Results 41 - 60 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 5378 0.67 0.894191
Target:  5'- gGCUCCgGCGGucCGaGCGG-CCGGCg -3'
miRNA:   3'- gCGAGGgCGUUu-GCaUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 42958 0.67 0.887331
Target:  5'- uGCUUCCGCAcgGACG-GCGGcguucCCGGCa -3'
miRNA:   3'- gCGAGGGCGU--UUGCaUGUCa----GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 52404 0.67 0.887331
Target:  5'- gCGCUCCagCGCGGGCGgcgcgcGCuGUCgAGCUc -3'
miRNA:   3'- -GCGAGG--GCGUUUGCa-----UGuCAGgUCGA- -5'
6670 5' -54.7 NC_001847.1 + 43119 0.67 0.887331
Target:  5'- gGCggugCCCGCAGACGgcGCGGgCCcGCg -3'
miRNA:   3'- gCGa---GGGCGUUUGCa-UGUCaGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 64172 0.67 0.887331
Target:  5'- cCGCUUgCGCGGACGggGCGG-CgGGCg -3'
miRNA:   3'- -GCGAGgGCGUUUGCa-UGUCaGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 24723 0.67 0.887331
Target:  5'- uCGCUCguacucggCCGUAAAggccgggcCGUGCAG-CCGGCUg -3'
miRNA:   3'- -GCGAG--------GGCGUUU--------GCAUGUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 74999 0.67 0.880237
Target:  5'- gGCUCaguCCGCcGGCGgGCGGggggCCAGCg -3'
miRNA:   3'- gCGAG---GGCGuUUGCaUGUCa---GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 86363 0.67 0.880237
Target:  5'- gGCgCCCGCAGACGagGCGG-CgGGCc -3'
miRNA:   3'- gCGaGGGCGUUUGCa-UGUCaGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 82317 0.67 0.880237
Target:  5'- gGCgCCCGCgAAACGcccgaGGUCCAGUg -3'
miRNA:   3'- gCGaGGGCG-UUUGCaug--UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 1055 0.67 0.872914
Target:  5'- gCGuCUCCCGCGGgcccugguccGCGUccCAGUCCAcGCc -3'
miRNA:   3'- -GC-GAGGGCGUU----------UGCAu-GUCAGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 103868 0.67 0.872914
Target:  5'- gCGuCUCCCGCGGgcccugguccGCGUccCAGUCCAcGCc -3'
miRNA:   3'- -GC-GAGGGCGUU----------UGCAu-GUCAGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 125972 0.68 0.865366
Target:  5'- aGCaaagCCCGUAcGCGUACAGggccaCGGCg -3'
miRNA:   3'- gCGa---GGGCGUuUGCAUGUCag---GUCGa -5'
6670 5' -54.7 NC_001847.1 + 6975 0.68 0.865366
Target:  5'- gCGCUUCCGCccGCGgGCcGcCCAGCa -3'
miRNA:   3'- -GCGAGGGCGuuUGCaUGuCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 55496 0.68 0.865366
Target:  5'- gGCUCCgGCAGugGUucgGCGG-CgAGCg -3'
miRNA:   3'- gCGAGGgCGUUugCA---UGUCaGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 80953 0.68 0.865366
Target:  5'- aGCUugUCCGCGAGCGcGCGGUCaaaguGCUc -3'
miRNA:   3'- gCGA--GGGCGUUUGCaUGUCAGgu---CGA- -5'
6670 5' -54.7 NC_001847.1 + 52862 0.68 0.864599
Target:  5'- aGCUCCaGCAAggcguggccgagcGCGUACAGgcgauggCCAGUc -3'
miRNA:   3'- gCGAGGgCGUU-------------UGCAUGUCa------GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 58284 0.68 0.8576
Target:  5'- uGCUCggCCGCGgcGACGgcgGCGG-CCGGCa -3'
miRNA:   3'- gCGAG--GGCGU--UUGCa--UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 93786 0.68 0.8576
Target:  5'- gCGCUCUcggcgCGCAAgcGCGUGCGG-CaCAGCg -3'
miRNA:   3'- -GCGAGG-----GCGUU--UGCAUGUCaG-GUCGa -5'
6670 5' -54.7 NC_001847.1 + 73721 0.68 0.8576
Target:  5'- gCGCggCCGCGGGCGUcgAGggCCGGCUg -3'
miRNA:   3'- -GCGagGGCGUUUGCAugUCa-GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 59583 0.68 0.849623
Target:  5'- aGCUCUgGCuGGCGUGCGcGUCCGcccGCg -3'
miRNA:   3'- gCGAGGgCGuUUGCAUGU-CAGGU---CGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.