miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 5035 0.68 0.840611
Target:  5'- gCGCUCUCGUAcuCGUcccagcccgcgucGCGGUCgGGCg -3'
miRNA:   3'- -GCGAGGGCGUuuGCA-------------UGUCAGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 26545 0.69 0.815737
Target:  5'- aCGUUUUCgGCGcGCGUGCGGUgCAGCa -3'
miRNA:   3'- -GCGAGGG-CGUuUGCAUGUCAgGUCGa -5'
6670 5' -54.7 NC_001847.1 + 62126 0.69 0.810402
Target:  5'- cCGCUgCCGCGGccugguuccgcgcccGCGcUGCGG-CCAGCUc -3'
miRNA:   3'- -GCGAgGGCGUU---------------UGC-AUGUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 46925 0.69 0.806811
Target:  5'- gGCUCCgGCGAgGCGcuuuugGguGUCCGGCa -3'
miRNA:   3'- gCGAGGgCGUU-UGCa-----UguCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 94086 0.69 0.788476
Target:  5'- gCGCggccagCCCGCccagcauccaGGACGUGCAGUUCcGCg -3'
miRNA:   3'- -GCGa-----GGGCG----------UUUGCAUGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 76527 0.69 0.788476
Target:  5'- aCGUcCCCGCGGGCGcGCuGgCCAGCg -3'
miRNA:   3'- -GCGaGGGCGUUUGCaUGuCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 50100 0.69 0.788476
Target:  5'- gGCUgCCGCGccgggcGGCGUAgAGcgCCGGCUg -3'
miRNA:   3'- gCGAgGGCGU------UUGCAUgUCa-GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 82843 0.69 0.779084
Target:  5'- uCGUUUgCCGCGcGGCGUAC-GUCCGGCa -3'
miRNA:   3'- -GCGAG-GGCGU-UUGCAUGuCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 67321 0.7 0.759899
Target:  5'- aGC-CCCGCcGGCGUAUAgGUgCAGCa -3'
miRNA:   3'- gCGaGGGCGuUUGCAUGU-CAgGUCGa -5'
6670 5' -54.7 NC_001847.1 + 115731 0.69 0.796804
Target:  5'- gCGCUCCCGCuuugccugcuGCGUcgccgcggagccgACGGggagCCGGCUc -3'
miRNA:   3'- -GCGAGGGCGuu--------UGCA-------------UGUCa---GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 68591 0.75 0.484862
Target:  5'- aCGCUgCCGCAGuagGCGcACGcGUCCAGCg -3'
miRNA:   3'- -GCGAgGGCGUU---UGCaUGU-CAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 115398 0.66 0.913327
Target:  5'- cCGCcuUCCCGCuAAGCGgcccGCcgcGUCCGGCc -3'
miRNA:   3'- -GCG--AGGGCG-UUUGCa---UGu--CAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 76481 0.66 0.919216
Target:  5'- cCGCccaacCgCCGCAAGCGUGCGacCCGGCg -3'
miRNA:   3'- -GCGa----G-GGCGUUUGCAUGUcaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 108679 0.66 0.919216
Target:  5'- cCGCUcCCCGCGcuGGCGaACAG-CCGcGCg -3'
miRNA:   3'- -GCGA-GGGCGU--UUGCaUGUCaGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 81811 0.66 0.924858
Target:  5'- uCGCuUUCCGCugcGGCGUGguccaggcgaGGUCCAGCg -3'
miRNA:   3'- -GCG-AGGGCGu--UUGCAUg---------UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 82590 0.66 0.924858
Target:  5'- aGCUCUCGCAGcAUGU-CGGccgcgcccUCCGGCg -3'
miRNA:   3'- gCGAGGGCGUU-UGCAuGUC--------AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 3232 0.66 0.924858
Target:  5'- gCGCgccgCCCGCGc-CGUGCucgCCGGCg -3'
miRNA:   3'- -GCGa---GGGCGUuuGCAUGucaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 73736 0.66 0.924858
Target:  5'- gCGcCUCCCGCGAGg--GCAGuUCCAaGCg -3'
miRNA:   3'- -GC-GAGGGCGUUUgcaUGUC-AGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 14654 0.66 0.93025
Target:  5'- cCGCUCgCUGCGAGCGggGCGcGUgUCGGCg -3'
miRNA:   3'- -GCGAG-GGCGUUUGCa-UGU-CA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 102096 0.66 0.93025
Target:  5'- gCGcCUCggCCGCGAGCGc---GUCCAGCUc -3'
miRNA:   3'- -GC-GAG--GGCGUUUGCauguCAGGUCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.