Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6670 | 5' | -54.7 | NC_001847.1 | + | 5035 | 0.68 | 0.840611 |
Target: 5'- gCGCUCUCGUAcuCGUcccagcccgcgucGCGGUCgGGCg -3' miRNA: 3'- -GCGAGGGCGUuuGCA-------------UGUCAGgUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 26545 | 0.69 | 0.815737 |
Target: 5'- aCGUUUUCgGCGcGCGUGCGGUgCAGCa -3' miRNA: 3'- -GCGAGGG-CGUuUGCAUGUCAgGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 62126 | 0.69 | 0.810402 |
Target: 5'- cCGCUgCCGCGGccugguuccgcgcccGCGcUGCGG-CCAGCUc -3' miRNA: 3'- -GCGAgGGCGUU---------------UGC-AUGUCaGGUCGA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 46925 | 0.69 | 0.806811 |
Target: 5'- gGCUCCgGCGAgGCGcuuuugGguGUCCGGCa -3' miRNA: 3'- gCGAGGgCGUU-UGCa-----UguCAGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 94086 | 0.69 | 0.788476 |
Target: 5'- gCGCggccagCCCGCccagcauccaGGACGUGCAGUUCcGCg -3' miRNA: 3'- -GCGa-----GGGCG----------UUUGCAUGUCAGGuCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 76527 | 0.69 | 0.788476 |
Target: 5'- aCGUcCCCGCGGGCGcGCuGgCCAGCg -3' miRNA: 3'- -GCGaGGGCGUUUGCaUGuCaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 50100 | 0.69 | 0.788476 |
Target: 5'- gGCUgCCGCGccgggcGGCGUAgAGcgCCGGCUg -3' miRNA: 3'- gCGAgGGCGU------UUGCAUgUCa-GGUCGA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 82843 | 0.69 | 0.779084 |
Target: 5'- uCGUUUgCCGCGcGGCGUAC-GUCCGGCa -3' miRNA: 3'- -GCGAG-GGCGU-UUGCAUGuCAGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 67321 | 0.7 | 0.759899 |
Target: 5'- aGC-CCCGCcGGCGUAUAgGUgCAGCa -3' miRNA: 3'- gCGaGGGCGuUUGCAUGU-CAgGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 115731 | 0.69 | 0.796804 |
Target: 5'- gCGCUCCCGCuuugccugcuGCGUcgccgcggagccgACGGggagCCGGCUc -3' miRNA: 3'- -GCGAGGGCGuu--------UGCA-------------UGUCa---GGUCGA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 68591 | 0.75 | 0.484862 |
Target: 5'- aCGCUgCCGCAGuagGCGcACGcGUCCAGCg -3' miRNA: 3'- -GCGAgGGCGUU---UGCaUGU-CAGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 115398 | 0.66 | 0.913327 |
Target: 5'- cCGCcuUCCCGCuAAGCGgcccGCcgcGUCCGGCc -3' miRNA: 3'- -GCG--AGGGCG-UUUGCa---UGu--CAGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 76481 | 0.66 | 0.919216 |
Target: 5'- cCGCccaacCgCCGCAAGCGUGCGacCCGGCg -3' miRNA: 3'- -GCGa----G-GGCGUUUGCAUGUcaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 108679 | 0.66 | 0.919216 |
Target: 5'- cCGCUcCCCGCGcuGGCGaACAG-CCGcGCg -3' miRNA: 3'- -GCGA-GGGCGU--UUGCaUGUCaGGU-CGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 81811 | 0.66 | 0.924858 |
Target: 5'- uCGCuUUCCGCugcGGCGUGguccaggcgaGGUCCAGCg -3' miRNA: 3'- -GCG-AGGGCGu--UUGCAUg---------UCAGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 82590 | 0.66 | 0.924858 |
Target: 5'- aGCUCUCGCAGcAUGU-CGGccgcgcccUCCGGCg -3' miRNA: 3'- gCGAGGGCGUU-UGCAuGUC--------AGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 3232 | 0.66 | 0.924858 |
Target: 5'- gCGCgccgCCCGCGc-CGUGCucgCCGGCg -3' miRNA: 3'- -GCGa---GGGCGUuuGCAUGucaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 73736 | 0.66 | 0.924858 |
Target: 5'- gCGcCUCCCGCGAGg--GCAGuUCCAaGCg -3' miRNA: 3'- -GC-GAGGGCGUUUgcaUGUC-AGGU-CGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 14654 | 0.66 | 0.93025 |
Target: 5'- cCGCUCgCUGCGAGCGggGCGcGUgUCGGCg -3' miRNA: 3'- -GCGAG-GGCGUUUGCa-UGU-CA-GGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 102096 | 0.66 | 0.93025 |
Target: 5'- gCGcCUCggCCGCGAGCGc---GUCCAGCUc -3' miRNA: 3'- -GC-GAG--GGCGUUUGCauguCAGGUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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