miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 50470 0.74 0.504425
Target:  5'- cCGCUgCCGCAGAcCGgcgcCGGUCCGGCc -3'
miRNA:   3'- -GCGAgGGCGUUU-GCau--GUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 51790 0.66 0.906565
Target:  5'- uCGC-CCCGC--GCGUcccggucGCAGaCCAGCa -3'
miRNA:   3'- -GCGaGGGCGuuUGCA-------UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 52404 0.67 0.887331
Target:  5'- gCGCUCCagCGCGGGCGgcgcgcGCuGUCgAGCUc -3'
miRNA:   3'- -GCGAGG--GCGUUUGCa-----UGuCAGgUCGA- -5'
6670 5' -54.7 NC_001847.1 + 52862 0.68 0.864599
Target:  5'- aGCUCCaGCAAggcguggccgagcGCGUACAGgcgauggCCAGUc -3'
miRNA:   3'- gCGAGGgCGUU-------------UGCAUGUCa------GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 53566 0.67 0.900812
Target:  5'- aCGCUCCCGUAGccgccggccccGCGcagcugcGCGGggCCGGCg -3'
miRNA:   3'- -GCGAGGGCGUU-----------UGCa------UGUCa-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 54109 0.67 0.896868
Target:  5'- uCGCcCCCGCAGuccgcggcgGCGUcGCccaugcgcuccuccuGGUCCAGCa -3'
miRNA:   3'- -GCGaGGGCGUU---------UGCA-UG---------------UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 55246 0.7 0.769555
Target:  5'- aCGCgUCCCGCugcuGCGUGCGGaCCgaacGGCg -3'
miRNA:   3'- -GCG-AGGGCGuu--UGCAUGUCaGG----UCGa -5'
6670 5' -54.7 NC_001847.1 + 55496 0.68 0.865366
Target:  5'- gGCUCCgGCAGugGUucgGCGG-CgAGCg -3'
miRNA:   3'- gCGAGGgCGUUugCA---UGUCaGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 56432 0.68 0.849623
Target:  5'- uCGCggaagaccgCCCGCAcucGCGUGCuGcCCGGCa -3'
miRNA:   3'- -GCGa--------GGGCGUu--UGCAUGuCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 56865 0.68 0.84144
Target:  5'- cCGC-CUCGCAGagGCGagcagGCAGUCCAGgUg -3'
miRNA:   3'- -GCGaGGGCGUU--UGCa----UGUCAGGUCgA- -5'
6670 5' -54.7 NC_001847.1 + 58284 0.68 0.8576
Target:  5'- uGCUCggCCGCGgcGACGgcgGCGG-CCGGCa -3'
miRNA:   3'- gCGAG--GGCGU--UUGCa--UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 59583 0.68 0.849623
Target:  5'- aGCUCUgGCuGGCGUGCGcGUCCGcccGCg -3'
miRNA:   3'- gCGAGGgCGuUUGCAUGU-CAGGU---CGa -5'
6670 5' -54.7 NC_001847.1 + 60165 0.75 0.465667
Target:  5'- gCGCcacgCCCGCGAGCGUGuCGG-CCAGUUg -3'
miRNA:   3'- -GCGa---GGGCGUUUGCAU-GUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 62126 0.69 0.810402
Target:  5'- cCGCUgCCGCGGccugguuccgcgcccGCGcUGCGG-CCAGCUc -3'
miRNA:   3'- -GCGAgGGCGUU---------------UGC-AUGUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 62918 0.69 0.798637
Target:  5'- uGCUcggggCCCGCGGGCGgcuccucgucgggggGCAGaUCCGGCa -3'
miRNA:   3'- gCGA-----GGGCGUUUGCa--------------UGUC-AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 63185 0.66 0.913327
Target:  5'- aGCUCgcgCCGCGccacGACGUGCGG-CgCGGCg -3'
miRNA:   3'- gCGAG---GGCGU----UUGCAUGUCaG-GUCGa -5'
6670 5' -54.7 NC_001847.1 + 63410 0.69 0.776239
Target:  5'- uGCUCCaGCAGGuccuuguagaccgcCGUGCAGUCCucgGGCa -3'
miRNA:   3'- gCGAGGgCGUUU--------------GCAUGUCAGG---UCGa -5'
6670 5' -54.7 NC_001847.1 + 64172 0.67 0.887331
Target:  5'- cCGCUUgCGCGGACGggGCGG-CgGGCg -3'
miRNA:   3'- -GCGAGgGCGUUUGCa-UGUCaGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 64262 0.68 0.83306
Target:  5'- aGCggUCCGCAGGCGguuugUACAGccCCAGCg -3'
miRNA:   3'- gCGa-GGGCGUUUGC-----AUGUCa-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 67321 0.7 0.759899
Target:  5'- aGC-CCCGCcGGCGUAUAgGUgCAGCa -3'
miRNA:   3'- gCGaGGGCGuUUGCAUGU-CAgGUCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.