Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6670 | 5' | -54.7 | NC_001847.1 | + | 50470 | 0.74 | 0.504425 |
Target: 5'- cCGCUgCCGCAGAcCGgcgcCGGUCCGGCc -3' miRNA: 3'- -GCGAgGGCGUUU-GCau--GUCAGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 51790 | 0.66 | 0.906565 |
Target: 5'- uCGC-CCCGC--GCGUcccggucGCAGaCCAGCa -3' miRNA: 3'- -GCGaGGGCGuuUGCA-------UGUCaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 52404 | 0.67 | 0.887331 |
Target: 5'- gCGCUCCagCGCGGGCGgcgcgcGCuGUCgAGCUc -3' miRNA: 3'- -GCGAGG--GCGUUUGCa-----UGuCAGgUCGA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 52862 | 0.68 | 0.864599 |
Target: 5'- aGCUCCaGCAAggcguggccgagcGCGUACAGgcgauggCCAGUc -3' miRNA: 3'- gCGAGGgCGUU-------------UGCAUGUCa------GGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 53566 | 0.67 | 0.900812 |
Target: 5'- aCGCUCCCGUAGccgccggccccGCGcagcugcGCGGggCCGGCg -3' miRNA: 3'- -GCGAGGGCGUU-----------UGCa------UGUCa-GGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 54109 | 0.67 | 0.896868 |
Target: 5'- uCGCcCCCGCAGuccgcggcgGCGUcGCccaugcgcuccuccuGGUCCAGCa -3' miRNA: 3'- -GCGaGGGCGUU---------UGCA-UG---------------UCAGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 55246 | 0.7 | 0.769555 |
Target: 5'- aCGCgUCCCGCugcuGCGUGCGGaCCgaacGGCg -3' miRNA: 3'- -GCG-AGGGCGuu--UGCAUGUCaGG----UCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 55496 | 0.68 | 0.865366 |
Target: 5'- gGCUCCgGCAGugGUucgGCGG-CgAGCg -3' miRNA: 3'- gCGAGGgCGUUugCA---UGUCaGgUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 56432 | 0.68 | 0.849623 |
Target: 5'- uCGCggaagaccgCCCGCAcucGCGUGCuGcCCGGCa -3' miRNA: 3'- -GCGa--------GGGCGUu--UGCAUGuCaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 56865 | 0.68 | 0.84144 |
Target: 5'- cCGC-CUCGCAGagGCGagcagGCAGUCCAGgUg -3' miRNA: 3'- -GCGaGGGCGUU--UGCa----UGUCAGGUCgA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 58284 | 0.68 | 0.8576 |
Target: 5'- uGCUCggCCGCGgcGACGgcgGCGG-CCGGCa -3' miRNA: 3'- gCGAG--GGCGU--UUGCa--UGUCaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 59583 | 0.68 | 0.849623 |
Target: 5'- aGCUCUgGCuGGCGUGCGcGUCCGcccGCg -3' miRNA: 3'- gCGAGGgCGuUUGCAUGU-CAGGU---CGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 60165 | 0.75 | 0.465667 |
Target: 5'- gCGCcacgCCCGCGAGCGUGuCGG-CCAGUUg -3' miRNA: 3'- -GCGa---GGGCGUUUGCAU-GUCaGGUCGA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 62126 | 0.69 | 0.810402 |
Target: 5'- cCGCUgCCGCGGccugguuccgcgcccGCGcUGCGG-CCAGCUc -3' miRNA: 3'- -GCGAgGGCGUU---------------UGC-AUGUCaGGUCGA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 62918 | 0.69 | 0.798637 |
Target: 5'- uGCUcggggCCCGCGGGCGgcuccucgucgggggGCAGaUCCGGCa -3' miRNA: 3'- gCGA-----GGGCGUUUGCa--------------UGUC-AGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 63185 | 0.66 | 0.913327 |
Target: 5'- aGCUCgcgCCGCGccacGACGUGCGG-CgCGGCg -3' miRNA: 3'- gCGAG---GGCGU----UUGCAUGUCaG-GUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 63410 | 0.69 | 0.776239 |
Target: 5'- uGCUCCaGCAGGuccuuguagaccgcCGUGCAGUCCucgGGCa -3' miRNA: 3'- gCGAGGgCGUUU--------------GCAUGUCAGG---UCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 64172 | 0.67 | 0.887331 |
Target: 5'- cCGCUUgCGCGGACGggGCGG-CgGGCg -3' miRNA: 3'- -GCGAGgGCGUUUGCa-UGUCaGgUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 64262 | 0.68 | 0.83306 |
Target: 5'- aGCggUCCGCAGGCGguuugUACAGccCCAGCg -3' miRNA: 3'- gCGa-GGGCGUUUGC-----AUGUCa-GGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 67321 | 0.7 | 0.759899 |
Target: 5'- aGC-CCCGCcGGCGUAUAgGUgCAGCa -3' miRNA: 3'- gCGaGGGCGuUUGCAUGU-CAgGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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