miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 26545 0.69 0.815737
Target:  5'- aCGUUUUCgGCGcGCGUGCGGUgCAGCa -3'
miRNA:   3'- -GCGAGGG-CGUuUGCAUGUCAgGUCGa -5'
6670 5' -54.7 NC_001847.1 + 27285 0.66 0.913327
Target:  5'- gGCUgCCCGcCGGGCGagaggacgGCGGUgCCGGCg -3'
miRNA:   3'- gCGA-GGGC-GUUUGCa-------UGUCA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 28667 0.66 0.924858
Target:  5'- gCGCUCgUCGCAcGACGUGCGcGUaUCGGCg -3'
miRNA:   3'- -GCGAG-GGCGU-UUGCAUGU-CA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 29319 0.71 0.689561
Target:  5'- gCGCggCCCGCGAcgcgguggagcGCGcGCGGcUCCAGCg -3'
miRNA:   3'- -GCGa-GGGCGUU-----------UGCaUGUC-AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 33897 0.68 0.84144
Target:  5'- gCGUggCCGCGGGCGUGCAGgaccgCCuguGGCa -3'
miRNA:   3'- -GCGagGGCGUUUGCAUGUCa----GG---UCGa -5'
6670 5' -54.7 NC_001847.1 + 35218 0.67 0.900812
Target:  5'- gCGCccugCgCGCGGACGUgcuGCAGgcggCCGGCg -3'
miRNA:   3'- -GCGa---GgGCGUUUGCA---UGUCa---GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41006 0.7 0.750125
Target:  5'- uGCUCCgGCGu-CGUGCcGUCCuGCa -3'
miRNA:   3'- gCGAGGgCGUuuGCAUGuCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 41070 0.71 0.71005
Target:  5'- gGCUggCCgCGCAAACGUACuGGUgCCGGCc -3'
miRNA:   3'- gCGA--GG-GCGUUUGCAUG-UCA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41318 0.69 0.806811
Target:  5'- aGCUCgCGC-GGCGcaaAGUCCAGCg -3'
miRNA:   3'- gCGAGgGCGuUUGCaugUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41400 0.73 0.595948
Target:  5'- cCGCUCCCGgAc-CGcGCGGUCUAGCa -3'
miRNA:   3'- -GCGAGGGCgUuuGCaUGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41497 0.67 0.900812
Target:  5'- gCGCUCCaugaccgagcgUGCAGACGUccGCGGccgcgCCGGCc -3'
miRNA:   3'- -GCGAGG-----------GCGUUUGCA--UGUCa----GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41996 0.68 0.824489
Target:  5'- cCGCcuuUCCCGCGgggGGCGccgGCAGcCCGGCc -3'
miRNA:   3'- -GCG---AGGGCGU---UUGCa--UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 42958 0.67 0.887331
Target:  5'- uGCUUCCGCAcgGACG-GCGGcguucCCGGCa -3'
miRNA:   3'- gCGAGGGCGU--UUGCaUGUCa----GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 43119 0.67 0.887331
Target:  5'- gGCggugCCCGCAGACGgcGCGGgCCcGCg -3'
miRNA:   3'- gCGa---GGGCGUUUGCa-UGUCaGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 43702 0.69 0.806811
Target:  5'- aCGCUCCCGCGcuuCGUcuGCgaAGUCC-GCg -3'
miRNA:   3'- -GCGAGGGCGUuu-GCA--UG--UCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 45179 0.67 0.900812
Target:  5'- cCGCUUCCGCcgcGCGcugGCAGUCgucucgCAGCg -3'
miRNA:   3'- -GCGAGGGCGuu-UGCa--UGUCAG------GUCGa -5'
6670 5' -54.7 NC_001847.1 + 45650 0.68 0.83306
Target:  5'- gCGCUgCCGCAAuGCG-GCGGUUCAGgCUu -3'
miRNA:   3'- -GCGAgGGCGUU-UGCaUGUCAGGUC-GA- -5'
6670 5' -54.7 NC_001847.1 + 46925 0.69 0.806811
Target:  5'- gGCUCCgGCGAgGCGcuuuugGguGUCCGGCa -3'
miRNA:   3'- gCGAGGgCGUU-UGCa-----UguCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 49233 0.74 0.534384
Target:  5'- uGCUCCaCGCAAACG-GCGGgguggcgCCGGCg -3'
miRNA:   3'- gCGAGG-GCGUUUGCaUGUCa------GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 50100 0.69 0.788476
Target:  5'- gGCUgCCGCGccgggcGGCGUAgAGcgCCGGCUg -3'
miRNA:   3'- gCGAgGGCGU------UUGCAUgUCa-GGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.