miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 1055 0.67 0.872914
Target:  5'- gCGuCUCCCGCGGgcccugguccGCGUccCAGUCCAcGCc -3'
miRNA:   3'- -GC-GAGGGCGUU----------UGCAu-GUCAGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 1100 0.67 0.894191
Target:  5'- cCGCggCCGCGGGCGgcgccgccGCGGccUCCAGCa -3'
miRNA:   3'- -GCGagGGCGUUUGCa-------UGUC--AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 1228 0.66 0.907192
Target:  5'- gCGCgccgCCCGCAGGCcagGUACA--CCGGCc -3'
miRNA:   3'- -GCGa---GGGCGUUUG---CAUGUcaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 2346 0.67 0.894191
Target:  5'- gGCUCCCGCc-GCGc-CGGcCCGGCc -3'
miRNA:   3'- gCGAGGGCGuuUGCauGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 3232 0.66 0.924858
Target:  5'- gCGCgccgCCCGCGc-CGUGCucgCCGGCg -3'
miRNA:   3'- -GCGa---GGGCGUuuGCAUGucaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 3631 0.7 0.73925
Target:  5'- cCGCUCCuggCGCAgguacacgaacgcGACGUACAGcagccaugCCAGCa -3'
miRNA:   3'- -GCGAGG---GCGU-------------UUGCAUGUCa-------GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 5035 0.68 0.840611
Target:  5'- gCGCUCUCGUAcuCGUcccagcccgcgucGCGGUCgGGCg -3'
miRNA:   3'- -GCGAGGGCGUuuGCA-------------UGUCAGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 5378 0.67 0.894191
Target:  5'- gGCUCCgGCGGucCGaGCGG-CCGGCg -3'
miRNA:   3'- gCGAGGgCGUUu-GCaUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 6975 0.68 0.865366
Target:  5'- gCGCUUCCGCccGCGgGCcGcCCAGCa -3'
miRNA:   3'- -GCGAGGGCGuuUGCaUGuCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 12099 0.7 0.730264
Target:  5'- gGCgCCCGCGGcCGUACu-UCCAGCg -3'
miRNA:   3'- gCGaGGGCGUUuGCAUGucAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 12588 0.73 0.575241
Target:  5'- gCGCcCUCGCAcuCGUGCGG-CCAGCg -3'
miRNA:   3'- -GCGaGGGCGUuuGCAUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 13364 0.7 0.759899
Target:  5'- aCGCUCcagCCGCGAACGgcgcGCAcGUCCgGGCg -3'
miRNA:   3'- -GCGAG---GGCGUUUGCa---UGU-CAGG-UCGa -5'
6670 5' -54.7 NC_001847.1 + 14654 0.66 0.93025
Target:  5'- cCGCUCgCUGCGAGCGggGCGcGUgUCGGCg -3'
miRNA:   3'- -GCGAG-GGCGUUUGCa-UGU-CA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 16336 0.7 0.730264
Target:  5'- aGCUCaCCGCAAcgGCGaGCAGcgcgcCCAGCa -3'
miRNA:   3'- gCGAG-GGCGUU--UGCaUGUCa----GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 17059 0.7 0.740244
Target:  5'- uCGCUUUCGCuaaaGAGCccgACGGUCCGGCa -3'
miRNA:   3'- -GCGAGGGCG----UUUGca-UGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 17456 0.7 0.730264
Target:  5'- aGgUCCCGCGGuCGUACAGgCCGGg- -3'
miRNA:   3'- gCgAGGGCGUUuGCAUGUCaGGUCga -5'
6670 5' -54.7 NC_001847.1 + 20082 0.68 0.849623
Target:  5'- gGCUCCCGCGGc---GCGGcCCGGCc -3'
miRNA:   3'- gCGAGGGCGUUugcaUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 20507 0.66 0.912725
Target:  5'- uGCUCCCGCcggacuauuuuccGGugGUGCccucGUCCAaGCc -3'
miRNA:   3'- gCGAGGGCG-------------UUugCAUGu---CAGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 24723 0.67 0.887331
Target:  5'- uCGCUCguacucggCCGUAAAggccgggcCGUGCAG-CCGGCUg -3'
miRNA:   3'- -GCGAG--------GGCGUUU--------GCAUGUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 25338 0.76 0.4195
Target:  5'- gGCUCCCGCAucguccACGUggcgGCGGUCgCGGCg -3'
miRNA:   3'- gCGAGGGCGUu-----UGCA----UGUCAG-GUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.