miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 132505 0.68 0.84144
Target:  5'- gGCg-CCGCAAGCGgcgacgGCGGUCCcGCc -3'
miRNA:   3'- gCGagGGCGUUUGCa-----UGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 132132 0.71 0.689561
Target:  5'- gCGCggCCCGCGAcgcgguggagcGCGcGCGGcUCCAGCg -3'
miRNA:   3'- -GCGa-GGGCGUU-----------UGCaUGUC-AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 125972 0.68 0.865366
Target:  5'- aGCaaagCCCGUAcGCGUACAGggccaCGGCg -3'
miRNA:   3'- gCGa---GGGCGUuUGCAUGUCag---GUCGa -5'
6670 5' -54.7 NC_001847.1 + 125805 0.66 0.913327
Target:  5'- gGCgggCCgGCGGGCGUGCAG-CUcaaAGCg -3'
miRNA:   3'- gCGa--GGgCGUUUGCAUGUCaGG---UCGa -5'
6670 5' -54.7 NC_001847.1 + 122457 0.7 0.720196
Target:  5'- uGCacCCCGCcGACGcGCAGUgCAGCUu -3'
miRNA:   3'- gCGa-GGGCGuUUGCaUGUCAgGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 115912 0.72 0.658478
Target:  5'- gGCUCgCGCAGGCGcugGCuGUCgCAGCg -3'
miRNA:   3'- gCGAGgGCGUUUGCa--UGuCAG-GUCGa -5'
6670 5' -54.7 NC_001847.1 + 115731 0.69 0.796804
Target:  5'- gCGCUCCCGCuuugccugcuGCGUcgccgcggagccgACGGggagCCGGCUc -3'
miRNA:   3'- -GCGAGGGCGuu--------UGCA-------------UGUCa---GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 115398 0.66 0.913327
Target:  5'- cCGCcuUCCCGCuAAGCGgcccGCcgcGUCCGGCc -3'
miRNA:   3'- -GCG--AGGGCG-UUUGCa---UGu--CAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 115092 1.09 0.003386
Target:  5'- cCGCUCCCGCAAACGUACAGUCCAGCUg -3'
miRNA:   3'- -GCGAGGGCGUUUGCAUGUCAGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 108679 0.66 0.919216
Target:  5'- cCGCUcCCCGCGcuGGCGaACAG-CCGcGCg -3'
miRNA:   3'- -GCGA-GGGCGU--UUGCaUGUCaGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 106555 0.67 0.894191
Target:  5'- aGCaauUUCCGCAAACGccuCAG-CCAGCc -3'
miRNA:   3'- gCG---AGGGCGUUUGCau-GUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 106045 0.66 0.924858
Target:  5'- gCGCgccgCCCGCGc-CGUGCucgCCGGCg -3'
miRNA:   3'- -GCGa---GGGCGUuuGCAUGucaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 105430 0.68 0.84144
Target:  5'- cCGCUCCCGCGcc---GCAGUCUcGCg -3'
miRNA:   3'- -GCGAGGGCGUuugcaUGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 105159 0.67 0.894191
Target:  5'- gGCUCCCGCc-GCGc-CGGcCCGGCc -3'
miRNA:   3'- gCGAGGGCGuuUGCauGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 104369 0.71 0.71005
Target:  5'- cCGCgCCCGCAGACGcGCGGcgcUgCAGCg -3'
miRNA:   3'- -GCGaGGGCGUUUGCaUGUC---AgGUCGa -5'
6670 5' -54.7 NC_001847.1 + 104041 0.66 0.907192
Target:  5'- gCGCgccgCCCGCAGGCcagGUACA--CCGGCc -3'
miRNA:   3'- -GCGa---GGGCGUUUG---CAUGUcaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 103913 0.67 0.894191
Target:  5'- cCGCggCCGCGGGCGgcgccgccGCGGccUCCAGCa -3'
miRNA:   3'- -GCGagGGCGUUUGCa-------UGUC--AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 103868 0.67 0.872914
Target:  5'- gCGuCUCCCGCGGgcccugguccGCGUccCAGUCCAcGCc -3'
miRNA:   3'- -GC-GAGGGCGUU----------UGCAu-GUCAGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 103304 0.67 0.900812
Target:  5'- cCGggCgCGCGAACGUAgGGUCCucGCa -3'
miRNA:   3'- -GCgaGgGCGUUUGCAUgUCAGGu-CGa -5'
6670 5' -54.7 NC_001847.1 + 102096 0.66 0.93025
Target:  5'- gCGcCUCggCCGCGAGCGc---GUCCAGCUc -3'
miRNA:   3'- -GC-GAG--GGCGUUUGCauguCAGGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.