miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 46925 0.69 0.806811
Target:  5'- gGCUCCgGCGAgGCGcuuuugGguGUCCGGCa -3'
miRNA:   3'- gCGAGGgCGUU-UGCa-----UguCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41006 0.7 0.750125
Target:  5'- uGCUCCgGCGu-CGUGCcGUCCuGCa -3'
miRNA:   3'- gCGAGGgCGUuuGCAUGuCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 67321 0.7 0.759899
Target:  5'- aGC-CCCGCcGGCGUAUAgGUgCAGCa -3'
miRNA:   3'- gCGaGGGCGuUUGCAUGU-CAgGUCGa -5'
6670 5' -54.7 NC_001847.1 + 55246 0.7 0.769555
Target:  5'- aCGCgUCCCGCugcuGCGUGCGGaCCgaacGGCg -3'
miRNA:   3'- -GCG-AGGGCGuu--UGCAUGUCaGG----UCGa -5'
6670 5' -54.7 NC_001847.1 + 82843 0.69 0.779084
Target:  5'- uCGUUUgCCGCGcGGCGUAC-GUCCGGCa -3'
miRNA:   3'- -GCGAG-GGCGU-UUGCAUGuCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 50100 0.69 0.788476
Target:  5'- gGCUgCCGCGccgggcGGCGUAgAGcgCCGGCUg -3'
miRNA:   3'- gCGAgGGCGU------UUGCAUgUCa-GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 76527 0.69 0.788476
Target:  5'- aCGUcCCCGCGGGCGcGCuGgCCAGCg -3'
miRNA:   3'- -GCGaGGGCGUUUGCaUGuCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 94086 0.69 0.788476
Target:  5'- gCGCggccagCCCGCccagcauccaGGACGUGCAGUUCcGCg -3'
miRNA:   3'- -GCGa-----GGGCG----------UUUGCAUGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 115731 0.69 0.796804
Target:  5'- gCGCUCCCGCuuugccugcuGCGUcgccgcggagccgACGGggagCCGGCUc -3'
miRNA:   3'- -GCGAGGGCGuu--------UGCA-------------UGUCa---GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 3631 0.7 0.73925
Target:  5'- cCGCUCCuggCGCAgguacacgaacgcGACGUACAGcagccaugCCAGCa -3'
miRNA:   3'- -GCGAGG---GCGU-------------UUGCAUGUCa-------GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 12099 0.7 0.730264
Target:  5'- gGCgCCCGCGGcCGUACu-UCCAGCg -3'
miRNA:   3'- gCGaGGGCGUUuGCAUGucAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 99579 0.7 0.727252
Target:  5'- cCGCUCCaaaGCGcgcacgccaagcuuGGCGcggggcUGCAGUCCGGCg -3'
miRNA:   3'- -GCGAGGg--CGU--------------UUGC------AUGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 25338 0.76 0.4195
Target:  5'- gGCUCCCGCAucguccACGUggcgGCGGUCgCGGCg -3'
miRNA:   3'- gCGAGGGCGUu-----UGCA----UGUCAG-GUCGa -5'
6670 5' -54.7 NC_001847.1 + 60165 0.75 0.465667
Target:  5'- gCGCcacgCCCGCGAGCGUGuCGG-CCAGUUg -3'
miRNA:   3'- -GCGa---GGGCGUUUGCAU-GUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 50470 0.74 0.504425
Target:  5'- cCGCUgCCGCAGAcCGgcgcCGGUCCGGCc -3'
miRNA:   3'- -GCGAgGGCGUUU-GCau--GUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 69284 0.73 0.585577
Target:  5'- gGCUUCCucuacGCGGGCGUGCGGgcggaCCGGCUg -3'
miRNA:   3'- gCGAGGG-----CGUUUGCAUGUCa----GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 41400 0.73 0.595948
Target:  5'- cCGCUCCCGgAc-CGcGCGGUCUAGCa -3'
miRNA:   3'- -GCGAGGGCgUuuGCaUGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 94034 0.72 0.658478
Target:  5'- gGCUUCCGCGccaaccACGUGCAGgCgCAGCUg -3'
miRNA:   3'- gCGAGGGCGUu-----UGCAUGUCaG-GUCGA- -5'
6670 5' -54.7 NC_001847.1 + 132132 0.71 0.689561
Target:  5'- gCGCggCCCGCGAcgcgguggagcGCGcGCGGcUCCAGCg -3'
miRNA:   3'- -GCGa-GGGCGUU-----------UGCaUGUC-AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 122457 0.7 0.720196
Target:  5'- uGCacCCCGCcGACGcGCAGUgCAGCUu -3'
miRNA:   3'- gCGa-GGGCGuUUGCaUGUCAgGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.