miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 80417 0.65 0.934891
Target:  5'- aCGUcCCCGUAGACGcucacgcGCAGggucuuuUCCAGCUc -3'
miRNA:   3'- -GCGaGGGCGUUUGCa------UGUC-------AGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 45179 0.67 0.900812
Target:  5'- cCGCUUCCGCcgcGCGcugGCAGUCgucucgCAGCg -3'
miRNA:   3'- -GCGAGGGCGuu-UGCa--UGUCAG------GUCGa -5'
6670 5' -54.7 NC_001847.1 + 41497 0.67 0.900812
Target:  5'- gCGCUCCaugaccgagcgUGCAGACGUccGCGGccgcgCCGGCc -3'
miRNA:   3'- -GCGAGG-----------GCGUUUGCA--UGUCa----GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 68591 0.75 0.484862
Target:  5'- aCGCUgCCGCAGuagGCGcACGcGUCCAGCg -3'
miRNA:   3'- -GCGAgGGCGUU---UGCaUGU-CAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 3232 0.66 0.924858
Target:  5'- gCGCgccgCCCGCGc-CGUGCucgCCGGCg -3'
miRNA:   3'- -GCGa---GGGCGUuuGCAUGucaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 82590 0.66 0.924858
Target:  5'- aGCUCUCGCAGcAUGU-CGGccgcgcccUCCGGCg -3'
miRNA:   3'- gCGAGGGCGUU-UGCAuGUC--------AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 108679 0.66 0.919216
Target:  5'- cCGCUcCCCGCGcuGGCGaACAG-CCGcGCg -3'
miRNA:   3'- -GCGA-GGGCGU--UUGCaUGUCaGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 76481 0.66 0.919216
Target:  5'- cCGCccaacCgCCGCAAGCGUGCGacCCGGCg -3'
miRNA:   3'- -GCGa----G-GGCGUUUGCAUGUcaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 125805 0.66 0.913327
Target:  5'- gGCgggCCgGCGGGCGUGCAG-CUcaaAGCg -3'
miRNA:   3'- gCGa--GGgCGUUUGCAUGUCaGG---UCGa -5'
6670 5' -54.7 NC_001847.1 + 103304 0.67 0.900812
Target:  5'- cCGggCgCGCGAACGUAgGGUCCucGCa -3'
miRNA:   3'- -GCgaGgGCGUUUGCAUgUCAGGu-CGa -5'
6670 5' -54.7 NC_001847.1 + 20507 0.66 0.912725
Target:  5'- uGCUCCCGCcggacuauuuuccGGugGUGCccucGUCCAaGCc -3'
miRNA:   3'- gCGAGGGCG-------------UUugCAUGu---CAGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 95980 0.66 0.913327
Target:  5'- cCGCUgCCGCGGcUGcGCGG-CCGGCa -3'
miRNA:   3'- -GCGAgGGCGUUuGCaUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 102096 0.66 0.93025
Target:  5'- gCGcCUCggCCGCGAGCGc---GUCCAGCUc -3'
miRNA:   3'- -GC-GAG--GGCGUUUGCauguCAGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 1228 0.66 0.907192
Target:  5'- gCGCgccgCCCGCAGGCcagGUACA--CCGGCc -3'
miRNA:   3'- -GCGa---GGGCGUUUG---CAUGUcaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 14654 0.66 0.93025
Target:  5'- cCGCUCgCUGCGAGCGggGCGcGUgUCGGCg -3'
miRNA:   3'- -GCGAG-GGCGUUUGCa-UGU-CA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 115398 0.66 0.913327
Target:  5'- cCGCcuUCCCGCuAAGCGgcccGCcgcGUCCGGCc -3'
miRNA:   3'- -GCG--AGGGCG-UUUGCa---UGu--CAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 51790 0.66 0.906565
Target:  5'- uCGC-CCCGC--GCGUcccggucGCAGaCCAGCa -3'
miRNA:   3'- -GCGaGGGCGuuUGCA-------UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 53566 0.67 0.900812
Target:  5'- aCGCUCCCGUAGccgccggccccGCGcagcugcGCGGggCCGGCg -3'
miRNA:   3'- -GCGAGGGCGUU-----------UGCa------UGUCa-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 73736 0.66 0.924858
Target:  5'- gCGcCUCCCGCGAGg--GCAGuUCCAaGCg -3'
miRNA:   3'- -GC-GAGGGCGUUUgcaUGUC-AGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 81811 0.66 0.924858
Target:  5'- uCGCuUUCCGCugcGGCGUGguccaggcgaGGUCCAGCg -3'
miRNA:   3'- -GCG-AGGGCGu--UUGCAUg---------UCAGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.