miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 115092 1.09 0.003386
Target:  5'- cCGCUCCCGCAAACGUACAGUCCAGCUg -3'
miRNA:   3'- -GCGAGGGCGUUUGCAUGUCAGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 25338 0.76 0.4195
Target:  5'- gGCUCCCGCAucguccACGUggcgGCGGUCgCGGCg -3'
miRNA:   3'- gCGAGGGCGUu-----UGCA----UGUCAG-GUCGa -5'
6670 5' -54.7 NC_001847.1 + 60165 0.75 0.465667
Target:  5'- gCGCcacgCCCGCGAGCGUGuCGG-CCAGUUg -3'
miRNA:   3'- -GCGa---GGGCGUUUGCAU-GUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 68591 0.75 0.484862
Target:  5'- aCGCUgCCGCAGuagGCGcACGcGUCCAGCg -3'
miRNA:   3'- -GCGAgGGCGUU---UGCaUGU-CAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 50470 0.74 0.504425
Target:  5'- cCGCUgCCGCAGAcCGgcgcCGGUCCGGCc -3'
miRNA:   3'- -GCGAgGGCGUUU-GCau--GUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 78395 0.74 0.514335
Target:  5'- aGCUCCUGCAG--GUACAGcuuggCCAGCUc -3'
miRNA:   3'- gCGAGGGCGUUugCAUGUCa----GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 49233 0.74 0.534384
Target:  5'- uGCUCCaCGCAAACG-GCGGgguggcgCCGGCg -3'
miRNA:   3'- gCGAGG-GCGUUUGCaUGUCa------GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 73496 0.74 0.544512
Target:  5'- gGCggCCGCGguggcGGCGcUGCAGUCCAGCg -3'
miRNA:   3'- gCGagGGCGU-----UUGC-AUGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 12588 0.73 0.575241
Target:  5'- gCGCcCUCGCAcuCGUGCGG-CCAGCg -3'
miRNA:   3'- -GCGaGGGCGUuuGCAUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 69284 0.73 0.585577
Target:  5'- gGCUUCCucuacGCGGGCGUGCGGgcggaCCGGCUg -3'
miRNA:   3'- gCGAGGG-----CGUUUGCAUGUCa----GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 41400 0.73 0.595948
Target:  5'- cCGCUCCCGgAc-CGcGCGGUCUAGCa -3'
miRNA:   3'- -GCGAGGGCgUuuGCaUGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 90620 0.72 0.637631
Target:  5'- cCGCgagCUCGCGGACG-GCGG-CCAGCUc -3'
miRNA:   3'- -GCGa--GGGCGUUUGCaUGUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 94034 0.72 0.658478
Target:  5'- gGCUUCCGCGccaaccACGUGCAGgCgCAGCUg -3'
miRNA:   3'- gCGAGGGCGUu-----UGCAUGUCaG-GUCGA- -5'
6670 5' -54.7 NC_001847.1 + 115912 0.72 0.658478
Target:  5'- gGCUCgCGCAGGCGcugGCuGUCgCAGCg -3'
miRNA:   3'- gCGAGgGCGUUUGCa--UGuCAG-GUCGa -5'
6670 5' -54.7 NC_001847.1 + 29319 0.71 0.689561
Target:  5'- gCGCggCCCGCGAcgcgguggagcGCGcGCGGcUCCAGCg -3'
miRNA:   3'- -GCGa-GGGCGUU-----------UGCaUGUC-AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 132132 0.71 0.689561
Target:  5'- gCGCggCCCGCGAcgcgguggagcGCGcGCGGcUCCAGCg -3'
miRNA:   3'- -GCGa-GGGCGUU-----------UGCaUGUC-AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41070 0.71 0.71005
Target:  5'- gGCUggCCgCGCAAACGUACuGGUgCCGGCc -3'
miRNA:   3'- gCGA--GG-GCGUUUGCAUG-UCA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 104369 0.71 0.71005
Target:  5'- cCGCgCCCGCAGACGcGCGGcgcUgCAGCg -3'
miRNA:   3'- -GCGaGGGCGUUUGCaUGUC---AgGUCGa -5'
6670 5' -54.7 NC_001847.1 + 101317 0.71 0.71005
Target:  5'- gCGCgCCCGCGucuGCGcACAGccgcUCCAGCg -3'
miRNA:   3'- -GCGaGGGCGUu--UGCaUGUC----AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 122457 0.7 0.720196
Target:  5'- uGCacCCCGCcGACGcGCAGUgCAGCUu -3'
miRNA:   3'- gCGa-GGGCGuUUGCaUGUCAgGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.