miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 99579 0.7 0.727252
Target:  5'- cCGCUCCaaaGCGcgcacgccaagcuuGGCGcggggcUGCAGUCCGGCg -3'
miRNA:   3'- -GCGAGGg--CGU--------------UUGC------AUGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 101278 0.7 0.730264
Target:  5'- gCGcCUCCUGCAAgaagcGCGcGCAGUCCucuGCg -3'
miRNA:   3'- -GC-GAGGGCGUU-----UGCaUGUCAGGu--CGa -5'
6670 5' -54.7 NC_001847.1 + 17456 0.7 0.730264
Target:  5'- aGgUCCCGCGGuCGUACAGgCCGGg- -3'
miRNA:   3'- gCgAGGGCGUUuGCAUGUCaGGUCga -5'
6670 5' -54.7 NC_001847.1 + 16336 0.7 0.730264
Target:  5'- aGCUCaCCGCAAcgGCGaGCAGcgcgcCCAGCa -3'
miRNA:   3'- gCGAG-GGCGUU--UGCaUGUCa----GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 12099 0.7 0.730264
Target:  5'- gGCgCCCGCGGcCGUACu-UCCAGCg -3'
miRNA:   3'- gCGaGGGCGUUuGCAUGucAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 3631 0.7 0.73925
Target:  5'- cCGCUCCuggCGCAgguacacgaacgcGACGUACAGcagccaugCCAGCa -3'
miRNA:   3'- -GCGAGG---GCGU-------------UUGCAUGUCa-------GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 17059 0.7 0.740244
Target:  5'- uCGCUUUCGCuaaaGAGCccgACGGUCCGGCa -3'
miRNA:   3'- -GCGAGGGCG----UUUGca-UGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41006 0.7 0.750125
Target:  5'- uGCUCCgGCGu-CGUGCcGUCCuGCa -3'
miRNA:   3'- gCGAGGgCGUuuGCAUGuCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 67321 0.7 0.759899
Target:  5'- aGC-CCCGCcGGCGUAUAgGUgCAGCa -3'
miRNA:   3'- gCGaGGGCGuUUGCAUGU-CAgGUCGa -5'
6670 5' -54.7 NC_001847.1 + 13364 0.7 0.759899
Target:  5'- aCGCUCcagCCGCGAACGgcgcGCAcGUCCgGGCg -3'
miRNA:   3'- -GCGAG---GGCGUUUGCa---UGU-CAGG-UCGa -5'
6670 5' -54.7 NC_001847.1 + 55246 0.7 0.769555
Target:  5'- aCGCgUCCCGCugcuGCGUGCGGaCCgaacGGCg -3'
miRNA:   3'- -GCG-AGGGCGuu--UGCAUGUCaGG----UCGa -5'
6670 5' -54.7 NC_001847.1 + 63410 0.69 0.776239
Target:  5'- uGCUCCaGCAGGuccuuguagaccgcCGUGCAGUCCucgGGCa -3'
miRNA:   3'- gCGAGGgCGUUU--------------GCAUGUCAGG---UCGa -5'
6670 5' -54.7 NC_001847.1 + 82843 0.69 0.779084
Target:  5'- uCGUUUgCCGCGcGGCGUAC-GUCCGGCa -3'
miRNA:   3'- -GCGAG-GGCGU-UUGCAUGuCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 76527 0.69 0.788476
Target:  5'- aCGUcCCCGCGGGCGcGCuGgCCAGCg -3'
miRNA:   3'- -GCGaGGGCGUUUGCaUGuCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 94086 0.69 0.788476
Target:  5'- gCGCggccagCCCGCccagcauccaGGACGUGCAGUUCcGCg -3'
miRNA:   3'- -GCGa-----GGGCG----------UUUGCAUGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 98670 0.69 0.788476
Target:  5'- aCGCgCCCGCGcAgGUGCAgGUCCcGCUc -3'
miRNA:   3'- -GCGaGGGCGUuUgCAUGU-CAGGuCGA- -5'
6670 5' -54.7 NC_001847.1 + 50100 0.69 0.788476
Target:  5'- gGCUgCCGCGccgggcGGCGUAgAGcgCCGGCUg -3'
miRNA:   3'- gCGAgGGCGU------UUGCAUgUCa-GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 115731 0.69 0.796804
Target:  5'- gCGCUCCCGCuuugccugcuGCGUcgccgcggagccgACGGggagCCGGCUc -3'
miRNA:   3'- -GCGAGGGCGuu--------UGCA-------------UGUCa---GGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 62918 0.69 0.798637
Target:  5'- uGCUcggggCCCGCGGGCGgcuccucgucgggggGCAGaUCCGGCa -3'
miRNA:   3'- gCGA-----GGGCGUUUGCa--------------UGUC-AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 83773 0.69 0.805909
Target:  5'- gGCcUCCGCGAGCGUcaccgucACGGUCC-GCg -3'
miRNA:   3'- gCGaGGGCGUUUGCA-------UGUCAGGuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.