miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 28667 0.66 0.924858
Target:  5'- gCGCUCgUCGCAcGACGUGCGcGUaUCGGCg -3'
miRNA:   3'- -GCGAG-GGCGU-UUGCAUGU-CA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 79244 0.66 0.924858
Target:  5'- gCGCUCCC-CGAGC-UGCuAG-CCGGCg -3'
miRNA:   3'- -GCGAGGGcGUUUGcAUG-UCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 71321 0.66 0.924858
Target:  5'- gGggCCCGCGGACGUGgAGcugCCAGg- -3'
miRNA:   3'- gCgaGGGCGUUUGCAUgUCa--GGUCga -5'
6670 5' -54.7 NC_001847.1 + 106045 0.66 0.924858
Target:  5'- gCGCgccgCCCGCGc-CGUGCucgCCGGCg -3'
miRNA:   3'- -GCGa---GGGCGUuuGCAUGucaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 102096 0.66 0.93025
Target:  5'- gCGcCUCggCCGCGAGCGc---GUCCAGCUc -3'
miRNA:   3'- -GC-GAG--GGCGUUUGCauguCAGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 14654 0.66 0.93025
Target:  5'- cCGCUCgCUGCGAGCGggGCGcGUgUCGGCg -3'
miRNA:   3'- -GCGAG-GGCGUUUGCa-UGU-CA-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 64172 0.67 0.887331
Target:  5'- cCGCUUgCGCGGACGggGCGG-CgGGCg -3'
miRNA:   3'- -GCGAGgGCGUUUGCa-UGUCaGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 24723 0.67 0.887331
Target:  5'- uCGCUCguacucggCCGUAAAggccgggcCGUGCAG-CCGGCUg -3'
miRNA:   3'- -GCGAG--------GGCGUUU--------GCAUGUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 5378 0.67 0.894191
Target:  5'- gGCUCCgGCGGucCGaGCGG-CCGGCg -3'
miRNA:   3'- gCGAGGgCGUUu-GCaUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 103913 0.67 0.894191
Target:  5'- cCGCggCCGCGGGCGgcgccgccGCGGccUCCAGCa -3'
miRNA:   3'- -GCGagGGCGUUUGCa-------UGUC--AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 105159 0.67 0.894191
Target:  5'- gGCUCCCGCc-GCGc-CGGcCCGGCc -3'
miRNA:   3'- gCGAGGGCGuuUGCauGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 35218 0.67 0.900812
Target:  5'- gCGCccugCgCGCGGACGUgcuGCAGgcggCCGGCg -3'
miRNA:   3'- -GCGa---GgGCGUUUGCA---UGUCa---GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 43119 0.67 0.887331
Target:  5'- gGCggugCCCGCAGACGgcGCGGgCCcGCg -3'
miRNA:   3'- gCGa---GGGCGUUUGCa-UGUCaGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 42958 0.67 0.887331
Target:  5'- uGCUUCCGCAcgGACG-GCGGcguucCCGGCa -3'
miRNA:   3'- gCGAGGGCGU--UUGCaUGUCa----GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 82317 0.67 0.880237
Target:  5'- gGCgCCCGCgAAACGcccgaGGUCCAGUg -3'
miRNA:   3'- gCGaGGGCG-UUUGCaug--UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 103868 0.67 0.872914
Target:  5'- gCGuCUCCCGCGGgcccugguccGCGUccCAGUCCAcGCc -3'
miRNA:   3'- -GC-GAGGGCGUU----------UGCAu-GUCAGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 53566 0.67 0.900812
Target:  5'- aCGCUCCCGUAGccgccggccccGCGcagcugcGCGGggCCGGCg -3'
miRNA:   3'- -GCGAGGGCGUU-----------UGCa------UGUCa-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 45179 0.67 0.900812
Target:  5'- cCGCUUCCGCcgcGCGcugGCAGUCgucucgCAGCg -3'
miRNA:   3'- -GCGAGGGCGuu-UGCa--UGUCAG------GUCGa -5'
6670 5' -54.7 NC_001847.1 + 103304 0.67 0.900812
Target:  5'- cCGggCgCGCGAACGUAgGGUCCucGCa -3'
miRNA:   3'- -GCgaGgGCGUUUGCAUgUCAGGu-CGa -5'
6670 5' -54.7 NC_001847.1 + 74999 0.67 0.880237
Target:  5'- gGCUCaguCCGCcGGCGgGCGGggggCCAGCg -3'
miRNA:   3'- gCGAG---GGCGuUUGCaUGUCa---GGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.