Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6670 | 5' | -54.7 | NC_001847.1 | + | 20507 | 0.66 | 0.912725 |
Target: 5'- uGCUCCCGCcggacuauuuuccGGugGUGCccucGUCCAaGCc -3' miRNA: 3'- gCGAGGGCG-------------UUugCAUGu---CAGGU-CGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 1228 | 0.66 | 0.907192 |
Target: 5'- gCGCgccgCCCGCAGGCcagGUACA--CCGGCc -3' miRNA: 3'- -GCGa---GGGCGUUUG---CAUGUcaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 104041 | 0.66 | 0.907192 |
Target: 5'- gCGCgccgCCCGCAGGCcagGUACA--CCGGCc -3' miRNA: 3'- -GCGa---GGGCGUUUG---CAUGUcaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 89590 | 0.66 | 0.907192 |
Target: 5'- aGC-CCCGCcuGCGUGCgcgGGcUCUGGCUg -3' miRNA: 3'- gCGaGGGCGuuUGCAUG---UC-AGGUCGA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 51790 | 0.66 | 0.906565 |
Target: 5'- uCGC-CCCGC--GCGUcccggucGCAGaCCAGCa -3' miRNA: 3'- -GCGaGGGCGuuUGCA-------UGUCaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 75336 | 0.66 | 0.905304 |
Target: 5'- gCGCUCCCggGCGGGCG-GCAGUgguaaaagcgcgucUCGGCg -3' miRNA: 3'- -GCGAGGG--CGUUUGCaUGUCA--------------GGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 45179 | 0.67 | 0.900812 |
Target: 5'- cCGCUUCCGCcgcGCGcugGCAGUCgucucgCAGCg -3' miRNA: 3'- -GCGAGGGCGuu-UGCa--UGUCAG------GUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 53566 | 0.67 | 0.900812 |
Target: 5'- aCGCUCCCGUAGccgccggccccGCGcagcugcGCGGggCCGGCg -3' miRNA: 3'- -GCGAGGGCGUU-----------UGCa------UGUCa-GGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 41497 | 0.67 | 0.900812 |
Target: 5'- gCGCUCCaugaccgagcgUGCAGACGUccGCGGccgcgCCGGCc -3' miRNA: 3'- -GCGAGG-----------GCGUUUGCA--UGUCa----GGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 35218 | 0.67 | 0.900812 |
Target: 5'- gCGCccugCgCGCGGACGUgcuGCAGgcggCCGGCg -3' miRNA: 3'- -GCGa---GgGCGUUUGCA---UGUCa---GGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 103304 | 0.67 | 0.900812 |
Target: 5'- cCGggCgCGCGAACGUAgGGUCCucGCa -3' miRNA: 3'- -GCgaGgGCGUUUGCAUgUCAGGu-CGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 54109 | 0.67 | 0.896868 |
Target: 5'- uCGCcCCCGCAGuccgcggcgGCGUcGCccaugcgcuccuccuGGUCCAGCa -3' miRNA: 3'- -GCGaGGGCGUU---------UGCA-UG---------------UCAGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 80911 | 0.67 | 0.894191 |
Target: 5'- gCGCUgCCCacgaGCAGACaGUccacGCcGUCCAGCUg -3' miRNA: 3'- -GCGA-GGG----CGUUUG-CA----UGuCAGGUCGA- -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 106555 | 0.67 | 0.894191 |
Target: 5'- aGCaauUUCCGCAAACGccuCAG-CCAGCc -3' miRNA: 3'- gCG---AGGGCGUUUGCau-GUCaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 70281 | 0.67 | 0.894191 |
Target: 5'- gCGCgcgCCUGCGAAaaGUAcCAGUCCuGCa -3' miRNA: 3'- -GCGa--GGGCGUUUg-CAU-GUCAGGuCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 2346 | 0.67 | 0.894191 |
Target: 5'- gGCUCCCGCc-GCGc-CGGcCCGGCc -3' miRNA: 3'- gCGAGGGCGuuUGCauGUCaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 1100 | 0.67 | 0.894191 |
Target: 5'- cCGCggCCGCGGGCGgcgccgccGCGGccUCCAGCa -3' miRNA: 3'- -GCGagGGCGUUUGCa-------UGUC--AGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 5378 | 0.67 | 0.894191 |
Target: 5'- gGCUCCgGCGGucCGaGCGG-CCGGCg -3' miRNA: 3'- gCGAGGgCGUUu-GCaUGUCaGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 103913 | 0.67 | 0.894191 |
Target: 5'- cCGCggCCGCGGGCGgcgccgccGCGGccUCCAGCa -3' miRNA: 3'- -GCGagGGCGUUUGCa-------UGUC--AGGUCGa -5' |
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6670 | 5' | -54.7 | NC_001847.1 | + | 105159 | 0.67 | 0.894191 |
Target: 5'- gGCUCCCGCc-GCGc-CGGcCCGGCc -3' miRNA: 3'- gCGAGGGCGuuUGCauGUCaGGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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