miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 20507 0.66 0.912725
Target:  5'- uGCUCCCGCcggacuauuuuccGGugGUGCccucGUCCAaGCc -3'
miRNA:   3'- gCGAGGGCG-------------UUugCAUGu---CAGGU-CGa -5'
6670 5' -54.7 NC_001847.1 + 89590 0.66 0.907192
Target:  5'- aGC-CCCGCcuGCGUGCgcgGGcUCUGGCUg -3'
miRNA:   3'- gCGaGGGCGuuUGCAUG---UC-AGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 104041 0.66 0.907192
Target:  5'- gCGCgccgCCCGCAGGCcagGUACA--CCGGCc -3'
miRNA:   3'- -GCGa---GGGCGUUUG---CAUGUcaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 1228 0.66 0.907192
Target:  5'- gCGCgccgCCCGCAGGCcagGUACA--CCGGCc -3'
miRNA:   3'- -GCGa---GGGCGUUUG---CAUGUcaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 51790 0.66 0.906565
Target:  5'- uCGC-CCCGC--GCGUcccggucGCAGaCCAGCa -3'
miRNA:   3'- -GCGaGGGCGuuUGCA-------UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 75336 0.66 0.905304
Target:  5'- gCGCUCCCggGCGGGCG-GCAGUgguaaaagcgcgucUCGGCg -3'
miRNA:   3'- -GCGAGGG--CGUUUGCaUGUCA--------------GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 45179 0.67 0.900812
Target:  5'- cCGCUUCCGCcgcGCGcugGCAGUCgucucgCAGCg -3'
miRNA:   3'- -GCGAGGGCGuu-UGCa--UGUCAG------GUCGa -5'
6670 5' -54.7 NC_001847.1 + 53566 0.67 0.900812
Target:  5'- aCGCUCCCGUAGccgccggccccGCGcagcugcGCGGggCCGGCg -3'
miRNA:   3'- -GCGAGGGCGUU-----------UGCa------UGUCa-GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 41497 0.67 0.900812
Target:  5'- gCGCUCCaugaccgagcgUGCAGACGUccGCGGccgcgCCGGCc -3'
miRNA:   3'- -GCGAGG-----------GCGUUUGCA--UGUCa----GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 103304 0.67 0.900812
Target:  5'- cCGggCgCGCGAACGUAgGGUCCucGCa -3'
miRNA:   3'- -GCgaGgGCGUUUGCAUgUCAGGu-CGa -5'
6670 5' -54.7 NC_001847.1 + 35218 0.67 0.900812
Target:  5'- gCGCccugCgCGCGGACGUgcuGCAGgcggCCGGCg -3'
miRNA:   3'- -GCGa---GgGCGUUUGCA---UGUCa---GGUCGa -5'
6670 5' -54.7 NC_001847.1 + 54109 0.67 0.896868
Target:  5'- uCGCcCCCGCAGuccgcggcgGCGUcGCccaugcgcuccuccuGGUCCAGCa -3'
miRNA:   3'- -GCGaGGGCGUU---------UGCA-UG---------------UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 105159 0.67 0.894191
Target:  5'- gGCUCCCGCc-GCGc-CGGcCCGGCc -3'
miRNA:   3'- gCGAGGGCGuuUGCauGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 103913 0.67 0.894191
Target:  5'- cCGCggCCGCGGGCGgcgccgccGCGGccUCCAGCa -3'
miRNA:   3'- -GCGagGGCGUUUGCa-------UGUC--AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 5378 0.67 0.894191
Target:  5'- gGCUCCgGCGGucCGaGCGG-CCGGCg -3'
miRNA:   3'- gCGAGGgCGUUu-GCaUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 80911 0.67 0.894191
Target:  5'- gCGCUgCCCacgaGCAGACaGUccacGCcGUCCAGCUg -3'
miRNA:   3'- -GCGA-GGG----CGUUUG-CA----UGuCAGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 1100 0.67 0.894191
Target:  5'- cCGCggCCGCGGGCGgcgccgccGCGGccUCCAGCa -3'
miRNA:   3'- -GCGagGGCGUUUGCa-------UGUC--AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 2346 0.67 0.894191
Target:  5'- gGCUCCCGCc-GCGc-CGGcCCGGCc -3'
miRNA:   3'- gCGAGGGCGuuUGCauGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 70281 0.67 0.894191
Target:  5'- gCGCgcgCCUGCGAAaaGUAcCAGUCCuGCa -3'
miRNA:   3'- -GCGa--GGGCGUUUg-CAU-GUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 106555 0.67 0.894191
Target:  5'- aGCaauUUCCGCAAACGccuCAG-CCAGCc -3'
miRNA:   3'- gCG---AGGGCGUUUGCau-GUCaGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.