miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 3' -51.6 NC_001847.1 + 25290 0.66 0.983832
Target:  5'- aCCGCGCaccACGUGGCgccc-UCGCCGa -3'
miRNA:   3'- aGGCGUG---UGCACUGauaucAGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 73195 0.66 0.983832
Target:  5'- aCgGCGCGCGggcaGGCUGcGGUCugCGa -3'
miRNA:   3'- aGgCGUGUGCa---CUGAUaUCAGugGUa -5'
6671 3' -51.6 NC_001847.1 + 85088 0.66 0.983832
Target:  5'- gCCGCGCGCG-GACccgcGGcCGCCAc -3'
miRNA:   3'- aGGCGUGUGCaCUGaua-UCaGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 72765 0.66 0.983832
Target:  5'- gUCCGCugGCGcUGACg-----CACCAg -3'
miRNA:   3'- -AGGCGugUGC-ACUGauaucaGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 96832 0.66 0.981799
Target:  5'- aCCGCGCggGCGuUGGCUAcacGGUUGCCGc -3'
miRNA:   3'- aGGCGUG--UGC-ACUGAUa--UCAGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 125417 0.66 0.979579
Target:  5'- cCCGguCGCGUGGCaagcgAGUgGCCGc -3'
miRNA:   3'- aGGCguGUGCACUGaua--UCAgUGGUa -5'
6671 3' -51.6 NC_001847.1 + 90561 0.66 0.979579
Target:  5'- gCCGCGCGCGagGGCgacgacgAGcCGCCAa -3'
miRNA:   3'- aGGCGUGUGCa-CUGaua----UCaGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 22604 0.66 0.979579
Target:  5'- cCCGguCGCGUGGCaagcgAGUgGCCGc -3'
miRNA:   3'- aGGCguGUGCACUGaua--UCAgUGGUa -5'
6671 3' -51.6 NC_001847.1 + 47129 0.66 0.979579
Target:  5'- -aCGCGCGCGUGGCccgggaaGGUUugCGUg -3'
miRNA:   3'- agGCGUGUGCACUGaua----UCAGugGUA- -5'
6671 3' -51.6 NC_001847.1 + 43649 0.66 0.979579
Target:  5'- -aCGCGCGCGagGGCUcgGGUgGCCc- -3'
miRNA:   3'- agGCGUGUGCa-CUGAuaUCAgUGGua -5'
6671 3' -51.6 NC_001847.1 + 25342 0.66 0.977165
Target:  5'- cCCGCAucgucCACGUGGCggcGGUCGCgGc -3'
miRNA:   3'- aGGCGU-----GUGCACUGauaUCAGUGgUa -5'
6671 3' -51.6 NC_001847.1 + 38019 0.66 0.977165
Target:  5'- cUCGCGCGgGUG-CUGUGGgcgcgCGCCGc -3'
miRNA:   3'- aGGCGUGUgCACuGAUAUCa----GUGGUa -5'
6671 3' -51.6 NC_001847.1 + 63783 0.66 0.977165
Target:  5'- aCCGCGCggACGcgGGCUuucUGGUCGCUGUg -3'
miRNA:   3'- aGGCGUG--UGCa-CUGAu--AUCAGUGGUA- -5'
6671 3' -51.6 NC_001847.1 + 131610 0.66 0.974547
Target:  5'- gCCGCGCuCGcGGCcGUAGUCgGCCAc -3'
miRNA:   3'- aGGCGUGuGCaCUGaUAUCAG-UGGUa -5'
6671 3' -51.6 NC_001847.1 + 96537 0.66 0.973721
Target:  5'- aCCGCGCGCGccGGCUGUgcagccgcgcgcgcGGUCugCu- -3'
miRNA:   3'- aGGCGUGUGCa-CUGAUA--------------UCAGugGua -5'
6671 3' -51.6 NC_001847.1 + 58467 0.67 0.968668
Target:  5'- gCCGCGCGCGUGAacg-GGUCGa--- -3'
miRNA:   3'- aGGCGUGUGCACUgauaUCAGUggua -5'
6671 3' -51.6 NC_001847.1 + 116580 0.67 0.968668
Target:  5'- gCgGCACACG-GGCc--GGUCACCGa -3'
miRNA:   3'- aGgCGUGUGCaCUGauaUCAGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 78729 0.67 0.968668
Target:  5'- uUCCGCgACGCgGUGGCUGUccccgCGCCGg -3'
miRNA:   3'- -AGGCG-UGUG-CACUGAUAuca--GUGGUa -5'
6671 3' -51.6 NC_001847.1 + 85982 0.67 0.965391
Target:  5'- cCCG-GCGCGUGACcGUGGUCcgcgcGCCGa -3'
miRNA:   3'- aGGCgUGUGCACUGaUAUCAG-----UGGUa -5'
6671 3' -51.6 NC_001847.1 + 83313 0.67 0.965391
Target:  5'- cCCGCGCACGggGGCgcuUGG-CGCCu- -3'
miRNA:   3'- aGGCGUGUGCa-CUGau-AUCaGUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.