Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6671 | 3' | -51.6 | NC_001847.1 | + | 93308 | 0.77 | 0.502101 |
Target: 5'- gCCGCGCGCGcGugUGUAGgcgCGCCAa -3' miRNA: 3'- aGGCGUGUGCaCugAUAUCa--GUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 90561 | 0.66 | 0.979579 |
Target: 5'- gCCGCGCGCGagGGCgacgacgAGcCGCCAa -3' miRNA: 3'- aGGCGUGUGCa-CUGaua----UCaGUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 63783 | 0.66 | 0.977165 |
Target: 5'- aCCGCGCggACGcgGGCUuucUGGUCGCUGUg -3' miRNA: 3'- aGGCGUG--UGCa-CUGAu--AUCAGUGGUA- -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 38019 | 0.66 | 0.977165 |
Target: 5'- cUCGCGCGgGUG-CUGUGGgcgcgCGCCGc -3' miRNA: 3'- aGGCGUGUgCACuGAUAUCa----GUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 25342 | 0.66 | 0.977165 |
Target: 5'- cCCGCAucgucCACGUGGCggcGGUCGCgGc -3' miRNA: 3'- aGGCGU-----GUGCACUGauaUCAGUGgUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 96537 | 0.66 | 0.973721 |
Target: 5'- aCCGCGCGCGccGGCUGUgcagccgcgcgcgcGGUCugCu- -3' miRNA: 3'- aGGCGUGUGCa-CUGAUA--------------UCAGugGua -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 78729 | 0.67 | 0.968668 |
Target: 5'- uUCCGCgACGCgGUGGCUGUccccgCGCCGg -3' miRNA: 3'- -AGGCG-UGUG-CACUGAUAuca--GUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 116580 | 0.67 | 0.968668 |
Target: 5'- gCgGCACACG-GGCc--GGUCACCGa -3' miRNA: 3'- aGgCGUGUGCaCUGauaUCAGUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 83313 | 0.67 | 0.965391 |
Target: 5'- cCCGCGCACGggGGCgcuUGG-CGCCu- -3' miRNA: 3'- aGGCGUGUGCa-CUGau-AUCaGUGGua -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 85982 | 0.67 | 0.965391 |
Target: 5'- cCCG-GCGCGUGACcGUGGUCcgcgcGCCGa -3' miRNA: 3'- aGGCgUGUGCACUGaUAUCAG-----UGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 29980 | 0.67 | 0.965391 |
Target: 5'- gCCGCcuucGCGCGgcugcagGGCUAU-GUCGCCGa -3' miRNA: 3'- aGGCG----UGUGCa------CUGAUAuCAGUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 49354 | 0.67 | 0.961881 |
Target: 5'- aUUCGCGCcaaACGUcGCgGUGGUCGCCGg -3' miRNA: 3'- -AGGCGUG---UGCAcUGaUAUCAGUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 87844 | 0.67 | 0.961881 |
Target: 5'- gCCgGCGgGCGUGAuggcccgcgggcCUGUGGUCGCUGUg -3' miRNA: 3'- aGG-CGUgUGCACU------------GAUAUCAGUGGUA- -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 72312 | 0.68 | 0.954137 |
Target: 5'- -aCGCGCGCGUGGCgGUGGaCGCgGa -3' miRNA: 3'- agGCGUGUGCACUGaUAUCaGUGgUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 85361 | 0.68 | 0.949893 |
Target: 5'- cCCGgGgGCGUGGCaAgcGUCGCCAg -3' miRNA: 3'- aGGCgUgUGCACUGaUauCAGUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 31447 | 0.68 | 0.949893 |
Target: 5'- cUgGCGCugGUGAUcGUGGgCGCCAUg -3' miRNA: 3'- aGgCGUGugCACUGaUAUCaGUGGUA- -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 11467 | 0.69 | 0.924809 |
Target: 5'- aCCGUGCGCGUGGCg--AGcccCGCCAc -3' miRNA: 3'- aGGCGUGUGCACUGauaUCa--GUGGUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 82674 | 0.72 | 0.793373 |
Target: 5'- gCCGCGCuCGUG-CUGUGGUCAUgAg -3' miRNA: 3'- aGGCGUGuGCACuGAUAUCAGUGgUa -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 24183 | 0.74 | 0.702725 |
Target: 5'- cUCGCACAgCGUGGCgcUGGUgGCCAUg -3' miRNA: 3'- aGGCGUGU-GCACUGauAUCAgUGGUA- -5' |
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6671 | 3' | -51.6 | NC_001847.1 | + | 115522 | 1.07 | 0.007591 |
Target: 5'- aUCCGCACACGUGACUAUAGUCACCAUg -3' miRNA: 3'- -AGGCGUGUGCACUGAUAUCAGUGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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