miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 3' -51.6 NC_001847.1 + 85088 0.66 0.983832
Target:  5'- gCCGCGCGCG-GACccgcGGcCGCCAc -3'
miRNA:   3'- aGGCGUGUGCaCUGaua-UCaGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 19614 0.7 0.886125
Target:  5'- gUCGC-CAUgGUGACUAUAGUCACg-- -3'
miRNA:   3'- aGGCGuGUG-CACUGAUAUCAGUGgua -5'
6671 3' -51.6 NC_001847.1 + 42956 0.67 0.958132
Target:  5'- gCCGCGCGCGgggggGGCg--GGcCGCCGg -3'
miRNA:   3'- aGGCGUGUGCa----CUGauaUCaGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 70118 0.67 0.958132
Target:  5'- aUCCGC-CACGUGGCgcucg-CGCCGc -3'
miRNA:   3'- -AGGCGuGUGCACUGauaucaGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 131610 0.66 0.974547
Target:  5'- gCCGCGCuCGcGGCcGUAGUCgGCCAc -3'
miRNA:   3'- aGGCGUGuGCaCUGaUAUCAG-UGGUa -5'
6671 3' -51.6 NC_001847.1 + 22604 0.66 0.979579
Target:  5'- cCCGguCGCGUGGCaagcgAGUgGCCGc -3'
miRNA:   3'- aGGCguGUGCACUGaua--UCAgUGGUa -5'
6671 3' -51.6 NC_001847.1 + 128292 0.72 0.783801
Target:  5'- cCCGCGCGCGUGcuGCUcgAGcaccUCGCCGa -3'
miRNA:   3'- aGGCGUGUGCAC--UGAuaUC----AGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 97448 0.69 0.905978
Target:  5'- -gCGCGCACGUGACgagGUccagcgcguugacGGUCugCAc -3'
miRNA:   3'- agGCGUGUGCACUGa--UA-------------UCAGugGUa -5'
6671 3' -51.6 NC_001847.1 + 58467 0.67 0.968668
Target:  5'- gCCGCGCGCGUGAacg-GGUCGa--- -3'
miRNA:   3'- aGGCGUGUGCACUgauaUCAGUggua -5'
6671 3' -51.6 NC_001847.1 + 47129 0.66 0.979579
Target:  5'- -aCGCGCGCGUGGCccgggaaGGUUugCGUg -3'
miRNA:   3'- agGCGUGUGCACUGaua----UCAGugGUA- -5'
6671 3' -51.6 NC_001847.1 + 96832 0.66 0.981799
Target:  5'- aCCGCGCggGCGuUGGCUAcacGGUUGCCGc -3'
miRNA:   3'- aGGCGUG--UGC-ACUGAUa--UCAGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 43649 0.66 0.979579
Target:  5'- -aCGCGCGCGagGGCUcgGGUgGCCc- -3'
miRNA:   3'- agGCGUGUGCa-CUGAuaUCAgUGGua -5'
6671 3' -51.6 NC_001847.1 + 81404 0.68 0.930348
Target:  5'- gCUGC-CGCGUGAC-AUGGUCGCa-- -3'
miRNA:   3'- aGGCGuGUGCACUGaUAUCAGUGgua -5'
6671 3' -51.6 NC_001847.1 + 132825 0.71 0.838646
Target:  5'- uUCCGCGCAgCG-GGCgu--GUCGCCAUg -3'
miRNA:   3'- -AGGCGUGU-GCaCUGauauCAGUGGUA- -5'
6671 3' -51.6 NC_001847.1 + 78729 0.67 0.968668
Target:  5'- uUCCGCgACGCgGUGGCUGUccccgCGCCGg -3'
miRNA:   3'- -AGGCG-UGUG-CACUGAUAuca--GUGGUa -5'
6671 3' -51.6 NC_001847.1 + 116580 0.67 0.968668
Target:  5'- gCgGCACACG-GGCc--GGUCACCGa -3'
miRNA:   3'- aGgCGUGUGCaCUGauaUCAGUGGUa -5'
6671 3' -51.6 NC_001847.1 + 83313 0.67 0.965391
Target:  5'- cCCGCGCACGggGGCgcuUGG-CGCCu- -3'
miRNA:   3'- aGGCGUGUGCa-CUGau-AUCaGUGGua -5'
6671 3' -51.6 NC_001847.1 + 85982 0.67 0.965391
Target:  5'- cCCG-GCGCGUGACcGUGGUCcgcgcGCCGa -3'
miRNA:   3'- aGGCgUGUGCACUGaUAUCAG-----UGGUa -5'
6671 3' -51.6 NC_001847.1 + 24183 0.74 0.702725
Target:  5'- cUCGCACAgCGUGGCgcUGGUgGCCAUg -3'
miRNA:   3'- aGGCGUGU-GCACUGauAUCAgUGGUA- -5'
6671 3' -51.6 NC_001847.1 + 85361 0.68 0.949893
Target:  5'- cCCGgGgGCGUGGCaAgcGUCGCCAg -3'
miRNA:   3'- aGGCgUgUGCACUGaUauCAGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.