miRNA display CGI


Results 41 - 60 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 10946 0.66 0.958415
Target:  5'- gCGCGGCuggccuuuGCGCaUAuGUACGuGGCgCGg -3'
miRNA:   3'- gGUGCCGu-------UGCGaAUuCAUGC-CCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 50671 0.66 0.962031
Target:  5'- -gAgGGCGACGUgccc-UGCGGGCUGu -3'
miRNA:   3'- ggUgCCGUUGCGaauucAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 52518 0.66 0.958787
Target:  5'- gCGCGGCcGCGCggcccgGGGgauggucgccggaggGCGcGGCCGa -3'
miRNA:   3'- gGUGCCGuUGCGaa----UUCa--------------UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 33159 0.66 0.958415
Target:  5'- gCGCGGCGGuugcgcCGCUgcAGcgGCuGGCCGg -3'
miRNA:   3'- gGUGCCGUU------GCGAauUCa-UGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 55346 0.66 0.956905
Target:  5'- cUCGCGGCggUGCUgaacgcgccGCGGGCg- -3'
miRNA:   3'- -GGUGCCGuuGCGAauuca----UGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 51189 0.66 0.965422
Target:  5'- gCgACGGCcuuccuguuucGGCGCUc-GGUGCuGGCCGu -3'
miRNA:   3'- -GgUGCCG-----------UUGCGAauUCAUGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 134376 0.66 0.95457
Target:  5'- gC-CGGCGcCGCc--GGcgGCGGGCCGg -3'
miRNA:   3'- gGuGCCGUuGCGaauUCa-UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 36134 0.66 0.95457
Target:  5'- gCCGCGcGCGcCGCggac--GCGGGCCu -3'
miRNA:   3'- -GGUGC-CGUuGCGaauucaUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 101763 0.66 0.96097
Target:  5'- cCCACGGCcgccaggaggcgcaGACuGCUgagggugAGGUGCgagGGGCCc -3'
miRNA:   3'- -GGUGCCG--------------UUG-CGAa------UUCAUG---CCCGGc -5'
6671 5' -53.7 NC_001847.1 + 135023 0.66 0.950492
Target:  5'- cCCGCgGGCGGgGCcgGGGcGCGGGgCGc -3'
miRNA:   3'- -GGUG-CCGUUgCGaaUUCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 131538 0.66 0.950492
Target:  5'- gCCAUGGCcuggcugcagAGCGCg-AAGcucGCGGGCCc -3'
miRNA:   3'- -GGUGCCG----------UUGCGaaUUCa--UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 85244 0.66 0.950492
Target:  5'- gC-CGGCGGCGCc-AGGUGCGcgagguagguGGCCGc -3'
miRNA:   3'- gGuGCCGUUGCGaaUUCAUGC----------CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 86431 0.66 0.950492
Target:  5'- --uUGGCGGCGCUgcgcGGcGCGGGCa- -3'
miRNA:   3'- gguGCCGUUGCGAau--UCaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 104223 0.66 0.950492
Target:  5'- gCGCGGCGGCacggGCaccgcGGUgcGCGGGCCc -3'
miRNA:   3'- gGUGCCGUUG----CGaau--UCA--UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 5115 0.66 0.954173
Target:  5'- -aGCGGCGgccgaagggcacGCGCUcuugUAGaagaagcagggguGUGCGGGCCa -3'
miRNA:   3'- ggUGCCGU------------UGCGA----AUU-------------CAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 13112 0.66 0.950492
Target:  5'- gUCGCGGCcggGGCGCgcgg--GCGGcGCCGc -3'
miRNA:   3'- -GGUGCCG---UUGCGaauucaUGCC-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 9150 0.66 0.95457
Target:  5'- aCCGCGGUAAugguCGCcgUGGcccuguacgcGUACGGGCUu -3'
miRNA:   3'- -GGUGCCGUU----GCGa-AUU----------CAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 29254 0.66 0.950492
Target:  5'- cCCGCGGCcGCGCacgGAcUACGuGGCgGc -3'
miRNA:   3'- -GGUGCCGuUGCGaa-UUcAUGC-CCGgC- -5'
6671 5' -53.7 NC_001847.1 + 87895 0.66 0.950492
Target:  5'- uUCugGGCGGgGCUUugcacAGGgGCGGGgCGu -3'
miRNA:   3'- -GGugCCGUUgCGAA-----UUCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 105571 0.66 0.958041
Target:  5'- gCGCGGCGGCGC-------CGGcGCCGg -3'
miRNA:   3'- gGUGCCGUUGCGaauucauGCC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.