miRNA display CGI


Results 21 - 40 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 108378 0.66 0.958415
Target:  5'- -aGCGGCAGCgGCaggUGuugcAGUACGGGUg- -3'
miRNA:   3'- ggUGCCGUUG-CGa--AU----UCAUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 28209 0.66 0.953371
Target:  5'- gCCACGGCGGCGUUcggcccggugaacaUGcagcgcgugguGGUGgagUGGGCCu -3'
miRNA:   3'- -GGUGCCGUUGCGA--------------AU-----------UCAU---GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 60843 0.66 0.959524
Target:  5'- cCCGCGGCGcuGCGCggcgccagggcguccAGcGCGGGgCGg -3'
miRNA:   3'- -GGUGCCGU--UGCGaau------------UCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 131213 0.66 0.95457
Target:  5'- cCCGCcGCGGCGCc--AGcGCGGGCgCGc -3'
miRNA:   3'- -GGUGcCGUUGCGaauUCaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 11635 0.66 0.952151
Target:  5'- cCCGCGGCAGCccuggccccggccccGCUUGcg-GCGGccccaGCCGa -3'
miRNA:   3'- -GGUGCCGUUG---------------CGAAUucaUGCC-----CGGC- -5'
6671 5' -53.7 NC_001847.1 + 33159 0.66 0.958415
Target:  5'- gCGCGGCGGuugcgcCGCUgcAGcgGCuGGCCGg -3'
miRNA:   3'- gGUGCCGUU------GCGAauUCa-UGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 5115 0.66 0.954173
Target:  5'- -aGCGGCGgccgaagggcacGCGCUcuugUAGaagaagcagggguGUGCGGGCCa -3'
miRNA:   3'- ggUGCCGU------------UGCGA----AUU-------------CAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 134376 0.66 0.95457
Target:  5'- gC-CGGCGcCGCc--GGcgGCGGGCCGg -3'
miRNA:   3'- gGuGCCGUuGCGaauUCa-UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 36963 0.66 0.950492
Target:  5'- gCUGCGGcCAGCGCgggcgccGGcgaGCGGGCCc -3'
miRNA:   3'- -GGUGCC-GUUGCGaau----UCa--UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 85244 0.66 0.950492
Target:  5'- gC-CGGCGGCGCc-AGGUGCGcgagguagguGGCCGc -3'
miRNA:   3'- gGuGCCGUUGCGaaUUCAUGC----------CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 47551 0.66 0.958415
Target:  5'- gCACGGCgGGCGCgggGAGcccgGC-GGCCGc -3'
miRNA:   3'- gGUGCCG-UUGCGaa-UUCa---UGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 135023 0.66 0.950492
Target:  5'- cCCGCgGGCGGgGCcgGGGcGCGGGgCGc -3'
miRNA:   3'- -GGUG-CCGUUgCGaaUUCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 52518 0.66 0.958787
Target:  5'- gCGCGGCcGCGCggcccgGGGgauggucgccggaggGCGcGGCCGa -3'
miRNA:   3'- gGUGCCGuUGCGaa----UUCa--------------UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 97187 0.66 0.958415
Target:  5'- aCGCGGgcCAugGCUaccGGUGCGGuugcucGCCGg -3'
miRNA:   3'- gGUGCC--GUugCGAau-UCAUGCC------CGGC- -5'
6671 5' -53.7 NC_001847.1 + 75102 0.66 0.958041
Target:  5'- uCgGCGGCGccccgGCGCUUGcccgagaAGgccCGGGCCc -3'
miRNA:   3'- -GgUGCCGU-----UGCGAAU-------UCau-GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 29315 0.66 0.958415
Target:  5'- gCCGCGGaCAagcgagccgcgaGCGC--GAGUGCGcgggcGGCCGu -3'
miRNA:   3'- -GGUGCC-GU------------UGCGaaUUCAUGC-----CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 86431 0.66 0.950492
Target:  5'- --uUGGCGGCGCUgcgcGGcGCGGGCa- -3'
miRNA:   3'- gguGCCGUUGCGAau--UCaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 18506 0.66 0.950492
Target:  5'- cCCGCGGCugccgaggccAGCGCU-----GCGGGCgCGc -3'
miRNA:   3'- -GGUGCCG----------UUGCGAauucaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 10946 0.66 0.958415
Target:  5'- gCGCGGCuggccuuuGCGCaUAuGUACGuGGCgCGg -3'
miRNA:   3'- gGUGCCGu-------UGCGaAUuCAUGC-CCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 105043 0.66 0.950492
Target:  5'- gCGCcGCGGCGC-UGGGcGCGGGCg- -3'
miRNA:   3'- gGUGcCGUUGCGaAUUCaUGCCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.