miRNA display CGI


Results 21 - 40 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 36134 0.66 0.95457
Target:  5'- gCCGCGcGCGcCGCggac--GCGGGCCu -3'
miRNA:   3'- -GGUGC-CGUuGCGaauucaUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 54589 0.66 0.950492
Target:  5'- gCugGGCGGCGCUg----GCGGcGCgCGc -3'
miRNA:   3'- gGugCCGUUGCGAauucaUGCC-CG-GC- -5'
6671 5' -53.7 NC_001847.1 + 135023 0.66 0.950492
Target:  5'- cCCGCgGGCGGgGCcgGGGcGCGGGgCGc -3'
miRNA:   3'- -GGUG-CCGUUgCGaaUUCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 55346 0.66 0.956905
Target:  5'- cUCGCGGCggUGCUgaacgcgccGCGGGCg- -3'
miRNA:   3'- -GGUGCCGuuGCGAauuca----UGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 7716 0.66 0.95457
Target:  5'- cCUugGGCAuucagGCGCa-GGGcGCGGGCgCGg -3'
miRNA:   3'- -GGugCCGU-----UGCGaaUUCaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 97187 0.66 0.958415
Target:  5'- aCGCGGgcCAugGCUaccGGUGCGGuugcucGCCGg -3'
miRNA:   3'- gGUGCC--GUugCGAau-UCAUGCC------CGGC- -5'
6671 5' -53.7 NC_001847.1 + 131538 0.66 0.950492
Target:  5'- gCCAUGGCcuggcugcagAGCGCg-AAGcucGCGGGCCc -3'
miRNA:   3'- -GGUGCCG----------UUGCGaaUUCa--UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 75102 0.66 0.958041
Target:  5'- uCgGCGGCGccccgGCGCUUGcccgagaAGgccCGGGCCc -3'
miRNA:   3'- -GgUGCCGU-----UGCGAAU-------UCau-GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 91455 0.66 0.959889
Target:  5'- gCGCGGgAGCGUccacacgAGGUcgucgagcaccugcgGCGGGCCa -3'
miRNA:   3'- gGUGCCgUUGCGaa-----UUCA---------------UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 86431 0.66 0.950492
Target:  5'- --uUGGCGGCGCUgcgcGGcGCGGGCa- -3'
miRNA:   3'- gguGCCGUUGCGAau--UCaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 11635 0.66 0.952151
Target:  5'- cCCGCGGCAGCccuggccccggccccGCUUGcg-GCGGccccaGCCGa -3'
miRNA:   3'- -GGUGCCGUUG---------------CGAAUucaUGCC-----CGGC- -5'
6671 5' -53.7 NC_001847.1 + 47551 0.66 0.958415
Target:  5'- gCACGGCgGGCGCgggGAGcccgGC-GGCCGc -3'
miRNA:   3'- gGUGCCG-UUGCGaa-UUCa---UGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 29315 0.66 0.958415
Target:  5'- gCCGCGGaCAagcgagccgcgaGCGC--GAGUGCGcgggcGGCCGu -3'
miRNA:   3'- -GGUGCC-GU------------UGCGaaUUCAUGC-----CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 9150 0.66 0.95457
Target:  5'- aCCGCGGUAAugguCGCcgUGGcccuguacgcGUACGGGCUu -3'
miRNA:   3'- -GGUGCCGUU----GCGa-AUU----------CAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 105043 0.66 0.950492
Target:  5'- gCGCcGCGGCGC-UGGGcGCGGGCg- -3'
miRNA:   3'- gGUGcCGUUGCGaAUUCaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 108378 0.66 0.958415
Target:  5'- -aGCGGCAGCgGCaggUGuugcAGUACGGGUg- -3'
miRNA:   3'- ggUGCCGUUG-CGa--AU----UCAUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 131213 0.66 0.95457
Target:  5'- cCCGCcGCGGCGCc--AGcGCGGGCgCGc -3'
miRNA:   3'- -GGUGcCGUUGCGaauUCaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 52518 0.66 0.958787
Target:  5'- gCGCGGCcGCGCggcccgGGGgauggucgccggaggGCGcGGCCGa -3'
miRNA:   3'- gGUGCCGuUGCGaa----UUCa--------------UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 133685 0.66 0.950071
Target:  5'- gCCGCGGCGgcaacguGCGCUacacGGUGgccacgcgccUGGGCCc -3'
miRNA:   3'- -GGUGCCGU-------UGCGAau--UCAU----------GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 85244 0.66 0.950492
Target:  5'- gC-CGGCGGCGCc-AGGUGCGcgagguagguGGCCGc -3'
miRNA:   3'- gGuGCCGUUGCGaaUUCAUGC----------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.