miRNA display CGI


Results 21 - 40 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 3734 0.66 0.965422
Target:  5'- gCCACGGC-GCGC------ACGcGGCCGu -3'
miRNA:   3'- -GGUGCCGuUGCGaauucaUGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 3816 0.71 0.763943
Target:  5'- gCgGCGGCGGCGCgcugc--CGGGCCa -3'
miRNA:   3'- -GgUGCCGUUGCGaauucauGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 3969 0.68 0.915173
Target:  5'- cCgGCGGCGaggGCGCcgGGGgcCGGGCgCGc -3'
miRNA:   3'- -GgUGCCGU---UGCGaaUUCauGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 4148 0.72 0.744492
Target:  5'- gCC-CGGCAuCGCUgcAGUccuCGGGCCc -3'
miRNA:   3'- -GGuGCCGUuGCGAauUCAu--GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 4187 0.71 0.782912
Target:  5'- aCC-CGGCGuCGCUgcAGUccuCGGGCCc -3'
miRNA:   3'- -GGuGCCGUuGCGAauUCAu--GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 4560 0.73 0.669609
Target:  5'- gCGCGGCGugGaaguggaaguGGUGCGGGUCGc -3'
miRNA:   3'- gGUGCCGUugCgaau------UCAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 4972 0.67 0.931777
Target:  5'- gCCGgGGgGGCaGCUgGGGUGCGgcGGCCGc -3'
miRNA:   3'- -GGUgCCgUUG-CGAaUUCAUGC--CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 5014 0.7 0.81911
Target:  5'- gCgGCGGCGGCGCggAGGggaagcuCGGGCg- -3'
miRNA:   3'- -GgUGCCGUUGCGaaUUCau-----GCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 5115 0.66 0.954173
Target:  5'- -aGCGGCGgccgaagggcacGCGCUcuugUAGaagaagcagggguGUGCGGGCCa -3'
miRNA:   3'- ggUGCCGU------------UGCGA----AUU-------------CAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 5532 0.67 0.946176
Target:  5'- -gGCGGCGACGCUcgUGAcgGCGGcCCa -3'
miRNA:   3'- ggUGCCGUUGCGA--AUUcaUGCCcGGc -5'
6671 5' -53.7 NC_001847.1 + 5565 0.66 0.958415
Target:  5'- -aGCGGCAGCgGCaggUGuugcAGUACGGGUg- -3'
miRNA:   3'- ggUGCCGUUG-CGa--AU----UCAUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 6451 0.71 0.782912
Target:  5'- gCGCGGCGACGgc---GUACGuGGCCa -3'
miRNA:   3'- gGUGCCGUUGCgaauuCAUGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 6683 0.69 0.878361
Target:  5'- gCCGCGGCGgccggccggGCGCgcgcgca-GGGCCGa -3'
miRNA:   3'- -GGUGCCGU---------UGCGaauucaugCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 6966 0.84 0.191128
Target:  5'- gUCGCGGCGGCGCUUccGcccGCGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGCGAAuuCa--UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 7264 0.67 0.93682
Target:  5'- gCGCGGCGggggcacgcgagACGCUccgcAGUACGaGCCGc -3'
miRNA:   3'- gGUGCCGU------------UGCGAau--UCAUGCcCGGC- -5'
6671 5' -53.7 NC_001847.1 + 7716 0.66 0.95457
Target:  5'- cCUugGGCAuucagGCGCa-GGGcGCGGGCgCGg -3'
miRNA:   3'- -GGugCCGU-----UGCGaaUUCaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 8091 0.7 0.822585
Target:  5'- aCCACGGCGAgGCgccgacccacgUGgccccguacaaccgcGGggcggGCGGGCCGa -3'
miRNA:   3'- -GGUGCCGUUgCGa----------AU---------------UCa----UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 8107 0.66 0.962031
Target:  5'- aCGCGGCGccaGCGC--AGGcGCGgGGCCc -3'
miRNA:   3'- gGUGCCGU---UGCGaaUUCaUGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 8378 0.73 0.667544
Target:  5'- gCGCGGCAGCGUgggcgucugccgcgUAGGcUACGGGCa- -3'
miRNA:   3'- gGUGCCGUUGCGa-------------AUUC-AUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 9150 0.66 0.95457
Target:  5'- aCCGCGGUAAugguCGCcgUGGcccuguacgcGUACGGGCUu -3'
miRNA:   3'- -GGUGCCGUU----GCGa-AUU----------CAUGCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.