miRNA display CGI


Results 1 - 20 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 475 0.67 0.946176
Target:  5'- gCgGCGGCAGCaGCggcGGcgGCGGGgCGg -3'
miRNA:   3'- -GgUGCCGUUG-CGaauUCa-UGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 1135 0.66 0.965422
Target:  5'- aCCAgCGGCGGCGCcucGGcGCGcGGCUc -3'
miRNA:   3'- -GGU-GCCGUUGCGaauUCaUGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 1169 0.67 0.931777
Target:  5'- gCGCGGCcGCGCagAAGgccaccgcCGcGGCCGg -3'
miRNA:   3'- gGUGCCGuUGCGaaUUCau------GC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 1410 0.66 0.950492
Target:  5'- gCGCGGCGGCacggGCaccgcGGUgcGCGGGCCc -3'
miRNA:   3'- gGUGCCGUUG----CGaau--UCA--UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 1528 0.7 0.836196
Target:  5'- gCCuCGGC-GCGCgcgAAGgcgccCGGGCCGa -3'
miRNA:   3'- -GGuGCCGuUGCGaa-UUCau---GCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 1577 0.67 0.924853
Target:  5'- gCACGGCGcgcgccaGCGCgccgcu-CGGGCCa -3'
miRNA:   3'- gGUGCCGU-------UGCGaauucauGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 1625 0.67 0.924853
Target:  5'- gCCGCGGCAgcaccgcgGCGCgcAGGUacACGugcgccugcccgacGGCCGg -3'
miRNA:   3'- -GGUGCCGU--------UGCGaaUUCA--UGC--------------CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 1923 0.69 0.875452
Target:  5'- cCCGCcGCGGCGCggcGGccacuCGGGCCGc -3'
miRNA:   3'- -GGUGcCGUUGCGaauUCau---GCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 2091 0.72 0.744492
Target:  5'- cCCGCGGgGcccGCGCggcg--GCGGGCCGc -3'
miRNA:   3'- -GGUGCCgU---UGCGaauucaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 2188 0.67 0.941619
Target:  5'- gCCugGGCGGCGU------GCGGGCg- -3'
miRNA:   3'- -GGugCCGUUGCGaauucaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 2230 0.66 0.950492
Target:  5'- gCGCcGCGGCGC-UGGGcGCGGGCg- -3'
miRNA:   3'- gGUGcCGUUGCGaAUUCaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 2315 0.66 0.962031
Target:  5'- cCCAUGGCGacacgcccgcuGCGCggAAcccgccguuuuGcACGGGCCGc -3'
miRNA:   3'- -GGUGCCGU-----------UGCGaaUU-----------CaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 2433 0.66 0.965422
Target:  5'- cCCGCGGCGGC-Cg-----GCaGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGcGaauucaUG-CCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 2537 0.74 0.617802
Target:  5'- aCC-CGGCGGCGCUcccgccgcCGGGCCGg -3'
miRNA:   3'- -GGuGCCGUUGCGAauucau--GCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 2538 0.68 0.888256
Target:  5'- gCCGCGGgAcCGCUgcucuccgGCGGGCUGu -3'
miRNA:   3'- -GGUGCCgUuGCGAauuca---UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 2758 0.66 0.958041
Target:  5'- gCGCGGCGGCGC-------CGGcGCCGg -3'
miRNA:   3'- gGUGCCGUUGCGaauucauGCC-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 3144 0.74 0.62195
Target:  5'- gCC-CGGCGGCGCcggcGGcgcgGCGGGCCGc -3'
miRNA:   3'- -GGuGCCGUUGCGaau-UCa---UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 3328 0.69 0.868024
Target:  5'- -gGCGGCcGCGCagGGGUGCGuuauGCCGa -3'
miRNA:   3'- ggUGCCGuUGCGaaUUCAUGCc---CGGC- -5'
6671 5' -53.7 NC_001847.1 + 3507 0.72 0.704455
Target:  5'- gCCGC-GCGA-GCUUcguGUACGGGCCGu -3'
miRNA:   3'- -GGUGcCGUUgCGAAuu-CAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 3716 0.69 0.85252
Target:  5'- cCCGCGGCcgcCGCgu-AGcGCGcGGCCGc -3'
miRNA:   3'- -GGUGCCGuu-GCGaauUCaUGC-CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.