miRNA display CGI


Results 1 - 20 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 115556 1.1 0.003969
Target:  5'- gCCACGGCAACGCUUAAGUACGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGCGAAUUCAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 6966 0.84 0.191128
Target:  5'- gUCGCGGCGGCGCUUccGcccGCGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGCGAAuuCa--UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 21616 0.81 0.276617
Target:  5'- cUCGCuGGCGGCGCUUGgccGGcGCGGGCCGc -3'
miRNA:   3'- -GGUG-CCGUUGCGAAU---UCaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 124429 0.81 0.276617
Target:  5'- cUCGCuGGCGGCGCUUGgccGGcGCGGGCCGc -3'
miRNA:   3'- -GGUG-CCGUUGCGAAU---UCaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 34147 0.81 0.283287
Target:  5'- gCCGCGGCGagcGCGCUgcgcgaggcggcUGAGgcgcUGCGGGCCGg -3'
miRNA:   3'- -GGUGCCGU---UGCGA------------AUUC----AUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 83037 0.79 0.373264
Target:  5'- cCCGCGGCcgcuaguGCGCUUGGGccgcgGCGcGGCCGa -3'
miRNA:   3'- -GGUGCCGu------UGCGAAUUCa----UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 131923 0.79 0.373264
Target:  5'- gCCGCGGCGGCGCggAGGcACGuGcGCCGg -3'
miRNA:   3'- -GGUGCCGUUGCGaaUUCaUGC-C-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 64464 0.78 0.381584
Target:  5'- cCCGCGGCGGCGCg-----GgGGGCCGa -3'
miRNA:   3'- -GGUGCCGUUGCGaauucaUgCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 19742 0.78 0.390028
Target:  5'- aCGCGGCGGgcCGCUUAgcgggaaggcggGGUGCGGGCuCGg -3'
miRNA:   3'- gGUGCCGUU--GCGAAU------------UCAUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 96498 0.78 0.390028
Target:  5'- gCCACGGCAACGCg-----GCGGGCa- -3'
miRNA:   3'- -GGUGCCGUUGCGaauucaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 116397 0.78 0.398592
Target:  5'- gCCGCGGCGgcgGCGCUcuGGgcccCGGGCCGc -3'
miRNA:   3'- -GGUGCCGU---UGCGAauUCau--GCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 68791 0.78 0.398592
Target:  5'- gCCGCGGCGGcCGCgcGA--GCGGGCCGa -3'
miRNA:   3'- -GGUGCCGUU-GCGaaUUcaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 55762 0.78 0.398592
Target:  5'- gCGCGGCcgUGCccUGAGUACGGGCuCGg -3'
miRNA:   3'- gGUGCCGuuGCGa-AUUCAUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 84238 0.78 0.416078
Target:  5'- uCCACGGCcGCGC---GGUACGuGGCCu -3'
miRNA:   3'- -GGUGCCGuUGCGaauUCAUGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 131262 0.78 0.424995
Target:  5'- gCCGCGGCGccGCGCg-----ACGGGCCGc -3'
miRNA:   3'- -GGUGCCGU--UGCGaauucaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 28449 0.78 0.424995
Target:  5'- gCCGCGGCGccGCGCg-----ACGGGCCGc -3'
miRNA:   3'- -GGUGCCGU--UGCGaauucaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 61944 0.77 0.432211
Target:  5'- -aGCGGCGGCGCggcccgcGCGGGCCGa -3'
miRNA:   3'- ggUGCCGUUGCGaauuca-UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 66244 0.77 0.434026
Target:  5'- gCGCGGCGGCGCUcggcaUGCuGGGCCGg -3'
miRNA:   3'- gGUGCCGUUGCGAauuc-AUG-CCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 61298 0.77 0.434026
Target:  5'- aCCGCGGCGGCGUUUuuaugcgcGGGUgcGCGGGgCGg -3'
miRNA:   3'- -GGUGCCGUUGCGAA--------UUCA--UGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 125788 0.77 0.443166
Target:  5'- gCCAUGGCAA-GC--GAGUcgGCGGGCCGg -3'
miRNA:   3'- -GGUGCCGUUgCGaaUUCA--UGCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.