miRNA display CGI


Results 21 - 40 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 69473 0.77 0.452414
Target:  5'- gCACGGCcagcuGCGCgauGGUGCGGGCgCGc -3'
miRNA:   3'- gGUGCCGu----UGCGaauUCAUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 15023 0.77 0.461767
Target:  5'- gUCGCGGCAAUgGCUUGAGUcgccgacgcGCGGGCg- -3'
miRNA:   3'- -GGUGCCGUUG-CGAAUUCA---------UGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 34402 0.76 0.484617
Target:  5'- gCCGCGGCAgacgcgGCGCUgggggcggcggaagAAGUAcuuCGGGCCGc -3'
miRNA:   3'- -GGUGCCGU------UGCGAa-------------UUCAU---GCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 130837 0.76 0.490414
Target:  5'- cCCGCaGGCGGCGCgcGAGUACcaaGGcGCCGg -3'
miRNA:   3'- -GGUG-CCGUUGCGaaUUCAUG---CC-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 19879 0.76 0.490414
Target:  5'- aUCAUGGCGGCGCUg----GCGGGCgCGa -3'
miRNA:   3'- -GGUGCCGUUGCGAauucaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 74682 0.76 0.490414
Target:  5'- gCCGCGGCAggacggcggccgGCGCUUuugccuGUACGGGgCGc -3'
miRNA:   3'- -GGUGCCGU------------UGCGAAuu----CAUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 26026 0.76 0.490414
Target:  5'- gUAUGGCGGCaGCaaaAGGUGCGGGCCa -3'
miRNA:   3'- gGUGCCGUUG-CGaa-UUCAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 12925 0.76 0.49917
Target:  5'- gCCGCGGgGGCGCgcgUGucgucgugcggugGGgcgGCGGGCCGg -3'
miRNA:   3'- -GGUGCCgUUGCGa--AU-------------UCa--UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 59541 0.76 0.500147
Target:  5'- aUCGCGGCAGCugGCU--GGUGCuGGGCCu -3'
miRNA:   3'- -GGUGCCGUUG--CGAauUCAUG-CCCGGc -5'
6671 5' -53.7 NC_001847.1 + 45679 0.76 0.500147
Target:  5'- gCgACGGCGGCGCcguccaaaAAGUuccACGGGCCGa -3'
miRNA:   3'- -GgUGCCGUUGCGaa------UUCA---UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 105684 0.75 0.529833
Target:  5'- gCCGCgGGCGGCGCUUcGGccGCGGGCgGc -3'
miRNA:   3'- -GGUG-CCGUUGCGAAuUCa-UGCCCGgC- -5'
6671 5' -53.7 NC_001847.1 + 69239 0.75 0.533841
Target:  5'- gCCGCGGCAACGCUggccuacuacGCGcGGCUGg -3'
miRNA:   3'- -GGUGCCGUUGCGAauuca-----UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 56079 0.75 0.539873
Target:  5'- gCGCGGCugAGCGCgcccgGGGUGCGgGGCUGg -3'
miRNA:   3'- gGUGCCG--UUGCGaa---UUCAUGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 100504 0.75 0.539873
Target:  5'- aCACGGCggUGCgguguggUGGGcUGCGGGUCGc -3'
miRNA:   3'- gGUGCCGuuGCGa------AUUC-AUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 98763 0.75 0.549978
Target:  5'- gCCGCGGCGcGCGCUgcc---CGGGCCGc -3'
miRNA:   3'- -GGUGCCGU-UGCGAauucauGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 124958 0.75 0.56014
Target:  5'- gCgGCGGCGGCGCgcaaAAGccggcgcaGCGGGCCGg -3'
miRNA:   3'- -GgUGCCGUUGCGaa--UUCa-------UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 22145 0.75 0.56014
Target:  5'- gCgGCGGCGGCGCgcaaAAGccggcgcaGCGGGCCGg -3'
miRNA:   3'- -GgUGCCGUUGCGaa--UUCa-------UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 48850 0.75 0.570353
Target:  5'- gCCuCGGCcGCGCggcgcgAGGUACGGGuuGa -3'
miRNA:   3'- -GGuGCCGuUGCGaa----UUCAUGCCCggC- -5'
6671 5' -53.7 NC_001847.1 + 52100 0.75 0.580611
Target:  5'- gCCGCGGCccaAGCGCacuAGcggccGCGGGCCGg -3'
miRNA:   3'- -GGUGCCG---UUGCGaauUCa----UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 73183 0.75 0.580611
Target:  5'- aCGCGGCGGCG---GAGUcggcccgcGCGGGCCGc -3'
miRNA:   3'- gGUGCCGUUGCgaaUUCA--------UGCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.