miRNA display CGI


Results 21 - 40 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 23945 0.66 0.963414
Target:  5'- uCC-CGGCAccccaucgaaacccgGCGUUgguGGUugccAUGGGCCGg -3'
miRNA:   3'- -GGuGCCGU---------------UGCGAau-UCA----UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 18238 0.66 0.962031
Target:  5'- gCGCGuGCucgcguGGCGCUUGaAGuUGCGGGUCa -3'
miRNA:   3'- gGUGC-CG------UUGCGAAU-UC-AUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 35463 0.66 0.962031
Target:  5'- gCCGCGGCGcgagagGCGCUaGAGgcggcaaagGCGGcGCgCGc -3'
miRNA:   3'- -GGUGCCGU------UGCGAaUUCa--------UGCC-CG-GC- -5'
6671 5' -53.7 NC_001847.1 + 134480 0.66 0.962031
Target:  5'- gCGCGGcCAACGaagUGcacggguguAGUGUGGGCCGu -3'
miRNA:   3'- gGUGCC-GUUGCga-AU---------UCAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 59413 0.66 0.962031
Target:  5'- gCGCGGCGGucauCGCUgcgcccCGGGCCu -3'
miRNA:   3'- gGUGCCGUU----GCGAauucauGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 113394 0.66 0.962031
Target:  5'- cCgGCGGCccccccGCGCgc----GCGGGCCGg -3'
miRNA:   3'- -GgUGCCGu-----UGCGaauucaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 21183 0.66 0.962031
Target:  5'- uCUGCGGCGACGCgcccg-GCGGcguaggagacGCCGc -3'
miRNA:   3'- -GGUGCCGUUGCGaauucaUGCC----------CGGC- -5'
6671 5' -53.7 NC_001847.1 + 79420 0.66 0.962031
Target:  5'- aCCACcGUGGCGCccGAGggcgGCGGGCa- -3'
miRNA:   3'- -GGUGcCGUUGCGaaUUCa---UGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 131055 0.66 0.962031
Target:  5'- aCCgACGcCGACGC-UGAGgcCGaGGCCGa -3'
miRNA:   3'- -GG-UGCcGUUGCGaAUUCauGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 10581 0.66 0.962031
Target:  5'- cCgGCGGCccccccGCGCgc----GCGGGCCGg -3'
miRNA:   3'- -GgUGCCGu-----UGCGaauucaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 123176 0.66 0.962031
Target:  5'- gCGCGGCGGCGCU------CaGGCCGc -3'
miRNA:   3'- gGUGCCGUUGCGAauucauGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 42733 0.66 0.962031
Target:  5'- -gGCGGCcGCGCg--GGcgGCGGGgCGg -3'
miRNA:   3'- ggUGCCGuUGCGaauUCa-UGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 52488 0.66 0.962031
Target:  5'- gCGCGGCGcgccGCGCUcgcGGGUuCGGGUgGc -3'
miRNA:   3'- gGUGCCGU----UGCGAa--UUCAuGCCCGgC- -5'
6671 5' -53.7 NC_001847.1 + 57907 0.66 0.962031
Target:  5'- cCCGC-GCGAcCGCgccAAGUcCGGGCCc -3'
miRNA:   3'- -GGUGcCGUU-GCGaa-UUCAuGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 34109 0.66 0.962031
Target:  5'- gCGCGGCGGCG---GAGccUGCGGcGCCu -3'
miRNA:   3'- gGUGCCGUUGCgaaUUC--AUGCC-CGGc -5'
6671 5' -53.7 NC_001847.1 + 50671 0.66 0.962031
Target:  5'- -gAgGGCGACGUgccc-UGCGGGCUGu -3'
miRNA:   3'- ggUgCCGUUGCGaauucAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 2315 0.66 0.962031
Target:  5'- cCCAUGGCGacacgcccgcuGCGCggAAcccgccguuuuGcACGGGCCGc -3'
miRNA:   3'- -GGUGCCGU-----------UGCGaaUU-----------CaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 36912 0.66 0.962031
Target:  5'- gCCACGGCGucgccuccuggGCGCgcu-GUGCuucucgcuGGCCGa -3'
miRNA:   3'- -GGUGCCGU-----------UGCGaauuCAUGc-------CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 58898 0.66 0.962031
Target:  5'- gCACGGCAaauGCGCc-----GCGGGCgGg -3'
miRNA:   3'- gGUGCCGU---UGCGaauucaUGCCCGgC- -5'
6671 5' -53.7 NC_001847.1 + 8107 0.66 0.962031
Target:  5'- aCGCGGCGccaGCGC--AGGcGCGgGGCCc -3'
miRNA:   3'- gGUGCCGU---UGCGaaUUCaUGC-CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.