miRNA display CGI


Results 41 - 60 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 50671 0.66 0.962031
Target:  5'- -gAgGGCGACGUgccc-UGCGGGCUGu -3'
miRNA:   3'- ggUgCCGUUGCGaauucAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 132750 0.66 0.961326
Target:  5'- gCCACGGCcgAGCGCgucaccgccGUcuucGCGGGCgCGc -3'
miRNA:   3'- -GGUGCCG--UUGCGaauu-----CA----UGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 101763 0.66 0.96097
Target:  5'- cCCACGGCcgccaggaggcgcaGACuGCUgagggugAGGUGCgagGGGCCc -3'
miRNA:   3'- -GGUGCCG--------------UUG-CGAa------UUCAUG---CCCGGc -5'
6671 5' -53.7 NC_001847.1 + 77191 0.66 0.960612
Target:  5'- gCCGCGaCcGCGCUgcugcccgcgacgGAGccGCGGGCCGc -3'
miRNA:   3'- -GGUGCcGuUGCGAa------------UUCa-UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 91455 0.66 0.959889
Target:  5'- gCGCGGgAGCGUccacacgAGGUcgucgagcaccugcgGCGGGCCa -3'
miRNA:   3'- gGUGCCgUUGCGaa-----UUCA---------------UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 60843 0.66 0.959524
Target:  5'- cCCGCGGCGcuGCGCggcgccagggcguccAGcGCGGGgCGg -3'
miRNA:   3'- -GGUGCCGU--UGCGaau------------UCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 52518 0.66 0.958787
Target:  5'- gCGCGGCcGCGCggcccgGGGgauggucgccggaggGCGcGGCCGa -3'
miRNA:   3'- gGUGCCGuUGCGaa----UUCa--------------UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 61435 0.66 0.958415
Target:  5'- cCCGCGGCcGCGCcgc----CGGGCgCGg -3'
miRNA:   3'- -GGUGCCGuUGCGaauucauGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 5565 0.66 0.958415
Target:  5'- -aGCGGCAGCgGCaggUGuugcAGUACGGGUg- -3'
miRNA:   3'- ggUGCCGUUG-CGa--AU----UCAUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 47551 0.66 0.958415
Target:  5'- gCACGGCgGGCGCgggGAGcccgGC-GGCCGc -3'
miRNA:   3'- gGUGCCG-UUGCGaa-UUCa---UGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 33159 0.66 0.958415
Target:  5'- gCGCGGCGGuugcgcCGCUgcAGcgGCuGGCCGg -3'
miRNA:   3'- gGUGCCGUU------GCGAauUCa-UGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 97187 0.66 0.958415
Target:  5'- aCGCGGgcCAugGCUaccGGUGCGGuugcucGCCGg -3'
miRNA:   3'- gGUGCC--GUugCGAau-UCAUGCC------CGGC- -5'
6671 5' -53.7 NC_001847.1 + 29315 0.66 0.958415
Target:  5'- gCCGCGGaCAagcgagccgcgaGCGC--GAGUGCGcgggcGGCCGu -3'
miRNA:   3'- -GGUGCC-GU------------UGCGaaUUCAUGC-----CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 10946 0.66 0.958415
Target:  5'- gCGCGGCuggccuuuGCGCaUAuGUACGuGGCgCGg -3'
miRNA:   3'- gGUGCCGu-------UGCGaAUuCAUGC-CCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 108378 0.66 0.958415
Target:  5'- -aGCGGCAGCgGCaggUGuugcAGUACGGGUg- -3'
miRNA:   3'- ggUGCCGUUG-CGa--AU----UCAUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 44815 0.66 0.958415
Target:  5'- gCGCGGCAccGCGCcccAGUcggcaAUGGGCgCGg -3'
miRNA:   3'- gGUGCCGU--UGCGaauUCA-----UGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 14201 0.66 0.958415
Target:  5'- -gGCGGCGGgGCUggcGGU-CaGGCCGg -3'
miRNA:   3'- ggUGCCGUUgCGAau-UCAuGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 71403 0.66 0.958415
Target:  5'- gCCGCcaGGCGGCGCUgu--UGCucGGCCGg -3'
miRNA:   3'- -GGUG--CCGUUGCGAauucAUGc-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 127632 0.66 0.958415
Target:  5'- aCgGCGGUGAUGCUUGcGUcacuacACGcGGCCu -3'
miRNA:   3'- -GgUGCCGUUGCGAAUuCA------UGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 71726 0.66 0.958415
Target:  5'- cCCGcCGGCGccgcguGCGCUcccGUGCGaGGCUGc -3'
miRNA:   3'- -GGU-GCCGU------UGCGAauuCAUGC-CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.