miRNA display CGI


Results 1 - 20 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 86431 0.66 0.950492
Target:  5'- --uUGGCGGCGCUgcgcGGcGCGGGCa- -3'
miRNA:   3'- gguGCCGUUGCGAau--UCaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 28209 0.66 0.953371
Target:  5'- gCCACGGCGGCGUUcggcccggugaacaUGcagcgcgugguGGUGgagUGGGCCu -3'
miRNA:   3'- -GGUGCCGUUGCGA--------------AU-----------UCAU---GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 18506 0.66 0.950492
Target:  5'- cCCGCGGCugccgaggccAGCGCU-----GCGGGCgCGc -3'
miRNA:   3'- -GGUGCCG----------UUGCGAauucaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 54589 0.66 0.950492
Target:  5'- gCugGGCGGCGCUg----GCGGcGCgCGc -3'
miRNA:   3'- gGugCCGUUGCGAauucaUGCC-CG-GC- -5'
6671 5' -53.7 NC_001847.1 + 36963 0.66 0.950492
Target:  5'- gCUGCGGcCAGCGCgggcgccGGcgaGCGGGCCc -3'
miRNA:   3'- -GGUGCC-GUUGCGaau----UCa--UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 87895 0.66 0.950492
Target:  5'- uUCugGGCGGgGCUUugcacAGGgGCGGGgCGu -3'
miRNA:   3'- -GGugCCGUUgCGAA-----UUCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 29254 0.66 0.950492
Target:  5'- cCCGCGGCcGCGCacgGAcUACGuGGCgGc -3'
miRNA:   3'- -GGUGCCGuUGCGaa-UUcAUGC-CCGgC- -5'
6671 5' -53.7 NC_001847.1 + 75636 0.66 0.95457
Target:  5'- aCgACGGCGAUGCcgGAGccggaggcGCGGGCg- -3'
miRNA:   3'- -GgUGCCGUUGCGaaUUCa-------UGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 133685 0.66 0.950071
Target:  5'- gCCGCGGCGgcaacguGCGCUacacGGUGgccacgcgccUGGGCCc -3'
miRNA:   3'- -GGUGCCGU-------UGCGAau--UCAU----------GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 135023 0.66 0.950492
Target:  5'- cCCGCgGGCGGgGCcgGGGcGCGGGgCGc -3'
miRNA:   3'- -GGUG-CCGUUgCGaaUUCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 69465 0.66 0.950492
Target:  5'- gCGCGGCGGCGgcgGGGcuccUGCuGGCCGg -3'
miRNA:   3'- gGUGCCGUUGCgaaUUC----AUGcCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 79276 0.66 0.950492
Target:  5'- gCGCGGCGaaGCGgUgccGGUgaACGGcGCCGg -3'
miRNA:   3'- gGUGCCGU--UGCgAau-UCA--UGCC-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 5115 0.66 0.954173
Target:  5'- -aGCGGCGgccgaagggcacGCGCUcuugUAGaagaagcagggguGUGCGGGCCa -3'
miRNA:   3'- ggUGCCGU------------UGCGA----AUU-------------CAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 11105 0.66 0.948794
Target:  5'- aCCACGGCGucgugGCGCUgGAGgacggcuucuuggACGcGGCgGa -3'
miRNA:   3'- -GGUGCCGU-----UGCGAaUUCa------------UGC-CCGgC- -5'
6671 5' -53.7 NC_001847.1 + 104223 0.66 0.950492
Target:  5'- gCGCGGCGGCacggGCaccgcGGUgcGCGGGCCc -3'
miRNA:   3'- gGUGCCGUUG----CGaau--UCA--UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 11635 0.66 0.952151
Target:  5'- cCCGCGGCAGCccuggccccggccccGCUUGcg-GCGGccccaGCCGa -3'
miRNA:   3'- -GGUGCCGUUG---------------CGAAUucaUGCC-----CGGC- -5'
6671 5' -53.7 NC_001847.1 + 131538 0.66 0.950492
Target:  5'- gCCAUGGCcuggcugcagAGCGCg-AAGcucGCGGGCCc -3'
miRNA:   3'- -GGUGCCG----------UUGCGaaUUCa--UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 85244 0.66 0.950492
Target:  5'- gC-CGGCGGCGCc-AGGUGCGcgagguagguGGCCGc -3'
miRNA:   3'- gGuGCCGUUGCGaaUUCAUGC----------CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 105043 0.66 0.950492
Target:  5'- gCGCcGCGGCGC-UGGGcGCGGGCg- -3'
miRNA:   3'- gGUGcCGUUGCGaAUUCaUGCCCGgc -5'
6671 5' -53.7 NC_001847.1 + 13112 0.66 0.950492
Target:  5'- gUCGCGGCcggGGCGCgcgg--GCGGcGCCGc -3'
miRNA:   3'- -GGUGCCG---UUGCGaauucaUGCC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.