Results 1 - 20 of 488 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 105043 | 0.66 | 0.950492 |
Target: 5'- gCGCcGCGGCGC-UGGGcGCGGGCg- -3' miRNA: 3'- gGUGcCGUUGCGaAUUCaUGCCCGgc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 18506 | 0.66 | 0.950492 |
Target: 5'- cCCGCGGCugccgaggccAGCGCU-----GCGGGCgCGc -3' miRNA: 3'- -GGUGCCG----------UUGCGAauucaUGCCCG-GC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 13112 | 0.66 | 0.950492 |
Target: 5'- gUCGCGGCcggGGCGCgcgg--GCGGcGCCGc -3' miRNA: 3'- -GGUGCCG---UUGCGaauucaUGCC-CGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 5115 | 0.66 | 0.954173 |
Target: 5'- -aGCGGCGgccgaagggcacGCGCUcuugUAGaagaagcagggguGUGCGGGCCa -3' miRNA: 3'- ggUGCCGU------------UGCGA----AUU-------------CAUGCCCGGc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 54589 | 0.66 | 0.950492 |
Target: 5'- gCugGGCGGCGCUg----GCGGcGCgCGc -3' miRNA: 3'- gGugCCGUUGCGAauucaUGCC-CG-GC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 104223 | 0.66 | 0.950492 |
Target: 5'- gCGCGGCGGCacggGCaccgcGGUgcGCGGGCCc -3' miRNA: 3'- gGUGCCGUUG----CGaau--UCA--UGCCCGGc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 85244 | 0.66 | 0.950492 |
Target: 5'- gC-CGGCGGCGCc-AGGUGCGcgagguagguGGCCGc -3' miRNA: 3'- gGuGCCGUUGCGaaUUCAUGC----------CCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 36963 | 0.66 | 0.950492 |
Target: 5'- gCUGCGGcCAGCGCgggcgccGGcgaGCGGGCCc -3' miRNA: 3'- -GGUGCC-GUUGCGaau----UCa--UGCCCGGc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 69465 | 0.66 | 0.950492 |
Target: 5'- gCGCGGCGGCGgcgGGGcuccUGCuGGCCGg -3' miRNA: 3'- gGUGCCGUUGCgaaUUC----AUGcCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 135023 | 0.66 | 0.950492 |
Target: 5'- cCCGCgGGCGGgGCcgGGGcGCGGGgCGc -3' miRNA: 3'- -GGUG-CCGUUgCGaaUUCaUGCCCgGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 11635 | 0.66 | 0.952151 |
Target: 5'- cCCGCGGCAGCccuggccccggccccGCUUGcg-GCGGccccaGCCGa -3' miRNA: 3'- -GGUGCCGUUG---------------CGAAUucaUGCC-----CGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 29254 | 0.66 | 0.950492 |
Target: 5'- cCCGCGGCcGCGCacgGAcUACGuGGCgGc -3' miRNA: 3'- -GGUGCCGuUGCGaa-UUcAUGC-CCGgC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 79276 | 0.66 | 0.950492 |
Target: 5'- gCGCGGCGaaGCGgUgccGGUgaACGGcGCCGg -3' miRNA: 3'- gGUGCCGU--UGCgAau-UCA--UGCC-CGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 86431 | 0.66 | 0.950492 |
Target: 5'- --uUGGCGGCGCUgcgcGGcGCGGGCa- -3' miRNA: 3'- gguGCCGUUGCGAau--UCaUGCCCGgc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 87895 | 0.66 | 0.950492 |
Target: 5'- uUCugGGCGGgGCUUugcacAGGgGCGGGgCGu -3' miRNA: 3'- -GGugCCGUUgCGAA-----UUCaUGCCCgGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 75636 | 0.66 | 0.95457 |
Target: 5'- aCgACGGCGAUGCcgGAGccggaggcGCGGGCg- -3' miRNA: 3'- -GgUGCCGUUGCGaaUUCa-------UGCCCGgc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 11105 | 0.66 | 0.948794 |
Target: 5'- aCCACGGCGucgugGCGCUgGAGgacggcuucuuggACGcGGCgGa -3' miRNA: 3'- -GGUGCCGU-----UGCGAaUUCa------------UGC-CCGgC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 131538 | 0.66 | 0.950492 |
Target: 5'- gCCAUGGCcuggcugcagAGCGCg-AAGcucGCGGGCCc -3' miRNA: 3'- -GGUGCCG----------UUGCGaaUUCa--UGCCCGGc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 28209 | 0.66 | 0.953371 |
Target: 5'- gCCACGGCGGCGUUcggcccggugaacaUGcagcgcgugguGGUGgagUGGGCCu -3' miRNA: 3'- -GGUGCCGUUGCGA--------------AU-----------UCAU---GCCCGGc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 133685 | 0.66 | 0.950071 |
Target: 5'- gCCGCGGCGgcaacguGCGCUacacGGUGgccacgcgccUGGGCCc -3' miRNA: 3'- -GGUGCCGU-------UGCGAau--UCAU----------GCCCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home