Results 1 - 20 of 488 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 115556 | 1.1 | 0.003969 |
Target: 5'- gCCACGGCAACGCUUAAGUACGGGCCGc -3' miRNA: 3'- -GGUGCCGUUGCGAAUUCAUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 6966 | 0.84 | 0.191128 |
Target: 5'- gUCGCGGCGGCGCUUccGcccGCGGGCCGc -3' miRNA: 3'- -GGUGCCGUUGCGAAuuCa--UGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 21616 | 0.81 | 0.276617 |
Target: 5'- cUCGCuGGCGGCGCUUGgccGGcGCGGGCCGc -3' miRNA: 3'- -GGUG-CCGUUGCGAAU---UCaUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 124429 | 0.81 | 0.276617 |
Target: 5'- cUCGCuGGCGGCGCUUGgccGGcGCGGGCCGc -3' miRNA: 3'- -GGUG-CCGUUGCGAAU---UCaUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 34147 | 0.81 | 0.283287 |
Target: 5'- gCCGCGGCGagcGCGCUgcgcgaggcggcUGAGgcgcUGCGGGCCGg -3' miRNA: 3'- -GGUGCCGU---UGCGA------------AUUC----AUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 131923 | 0.79 | 0.373264 |
Target: 5'- gCCGCGGCGGCGCggAGGcACGuGcGCCGg -3' miRNA: 3'- -GGUGCCGUUGCGaaUUCaUGC-C-CGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 83037 | 0.79 | 0.373264 |
Target: 5'- cCCGCGGCcgcuaguGCGCUUGGGccgcgGCGcGGCCGa -3' miRNA: 3'- -GGUGCCGu------UGCGAAUUCa----UGC-CCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 19742 | 0.78 | 0.390028 |
Target: 5'- aCGCGGCGGgcCGCUUAgcgggaaggcggGGUGCGGGCuCGg -3' miRNA: 3'- gGUGCCGUU--GCGAAU------------UCAUGCCCG-GC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 55762 | 0.78 | 0.398592 |
Target: 5'- gCGCGGCcgUGCccUGAGUACGGGCuCGg -3' miRNA: 3'- gGUGCCGuuGCGa-AUUCAUGCCCG-GC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 68791 | 0.78 | 0.398592 |
Target: 5'- gCCGCGGCGGcCGCgcGA--GCGGGCCGa -3' miRNA: 3'- -GGUGCCGUU-GCGaaUUcaUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 131262 | 0.78 | 0.424995 |
Target: 5'- gCCGCGGCGccGCGCg-----ACGGGCCGc -3' miRNA: 3'- -GGUGCCGU--UGCGaauucaUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 64464 | 0.78 | 0.381584 |
Target: 5'- cCCGCGGCGGCGCg-----GgGGGCCGa -3' miRNA: 3'- -GGUGCCGUUGCGaauucaUgCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 96498 | 0.78 | 0.390028 |
Target: 5'- gCCACGGCAACGCg-----GCGGGCa- -3' miRNA: 3'- -GGUGCCGUUGCGaauucaUGCCCGgc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 28449 | 0.78 | 0.424995 |
Target: 5'- gCCGCGGCGccGCGCg-----ACGGGCCGc -3' miRNA: 3'- -GGUGCCGU--UGCGaauucaUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 84238 | 0.78 | 0.416078 |
Target: 5'- uCCACGGCcGCGC---GGUACGuGGCCu -3' miRNA: 3'- -GGUGCCGuUGCGaauUCAUGC-CCGGc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 116397 | 0.78 | 0.398592 |
Target: 5'- gCCGCGGCGgcgGCGCUcuGGgcccCGGGCCGc -3' miRNA: 3'- -GGUGCCGU---UGCGAauUCau--GCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 61944 | 0.77 | 0.432211 |
Target: 5'- -aGCGGCGGCGCggcccgcGCGGGCCGa -3' miRNA: 3'- ggUGCCGUUGCGaauuca-UGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 66244 | 0.77 | 0.434026 |
Target: 5'- gCGCGGCGGCGCUcggcaUGCuGGGCCGg -3' miRNA: 3'- gGUGCCGUUGCGAauuc-AUG-CCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 61298 | 0.77 | 0.434026 |
Target: 5'- aCCGCGGCGGCGUUUuuaugcgcGGGUgcGCGGGgCGg -3' miRNA: 3'- -GGUGCCGUUGCGAA--------UUCA--UGCCCgGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 15023 | 0.77 | 0.461767 |
Target: 5'- gUCGCGGCAAUgGCUUGAGUcgccgacgcGCGGGCg- -3' miRNA: 3'- -GGUGCCGUUG-CGAAUUCA---------UGCCCGgc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home