miRNA display CGI


Results 1 - 20 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 48850 0.75 0.570353
Target:  5'- gCCuCGGCcGCGCggcgcgAGGUACGGGuuGa -3'
miRNA:   3'- -GGuGCCGuUGCGaa----UUCAUGCCCggC- -5'
6671 5' -53.7 NC_001847.1 + 34402 0.76 0.484617
Target:  5'- gCCGCGGCAgacgcgGCGCUgggggcggcggaagAAGUAcuuCGGGCCGc -3'
miRNA:   3'- -GGUGCCGU------UGCGAa-------------UUCAU---GCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 74682 0.76 0.490414
Target:  5'- gCCGCGGCAggacggcggccgGCGCUUuugccuGUACGGGgCGc -3'
miRNA:   3'- -GGUGCCGU------------UGCGAAuu----CAUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 19879 0.76 0.490414
Target:  5'- aUCAUGGCGGCGCUg----GCGGGCgCGa -3'
miRNA:   3'- -GGUGCCGUUGCGAauucaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 26026 0.76 0.490414
Target:  5'- gUAUGGCGGCaGCaaaAGGUGCGGGCCa -3'
miRNA:   3'- gGUGCCGUUG-CGaa-UUCAUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 69239 0.75 0.533841
Target:  5'- gCCGCGGCAACGCUggccuacuacGCGcGGCUGg -3'
miRNA:   3'- -GGUGCCGUUGCGAauuca-----UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 100504 0.75 0.539873
Target:  5'- aCACGGCggUGCgguguggUGGGcUGCGGGUCGc -3'
miRNA:   3'- gGUGCCGuuGCGa------AUUC-AUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 56079 0.75 0.539873
Target:  5'- gCGCGGCugAGCGCgcccgGGGUGCGgGGCUGg -3'
miRNA:   3'- gGUGCCG--UUGCGaa---UUCAUGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 124958 0.75 0.56014
Target:  5'- gCgGCGGCGGCGCgcaaAAGccggcgcaGCGGGCCGg -3'
miRNA:   3'- -GgUGCCGUUGCGaa--UUCa-------UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 66244 0.77 0.434026
Target:  5'- gCGCGGCGGCGCUcggcaUGCuGGGCCGg -3'
miRNA:   3'- gGUGCCGUUGCGAauuc-AUG-CCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 61944 0.77 0.432211
Target:  5'- -aGCGGCGGCGCggcccgcGCGGGCCGa -3'
miRNA:   3'- ggUGCCGUUGCGaauuca-UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 131262 0.78 0.424995
Target:  5'- gCCGCGGCGccGCGCg-----ACGGGCCGc -3'
miRNA:   3'- -GGUGCCGU--UGCGaauucaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 6966 0.84 0.191128
Target:  5'- gUCGCGGCGGCGCUUccGcccGCGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGCGAAuuCa--UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 124429 0.81 0.276617
Target:  5'- cUCGCuGGCGGCGCUUGgccGGcGCGGGCCGc -3'
miRNA:   3'- -GGUG-CCGUUGCGAAU---UCaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 34147 0.81 0.283287
Target:  5'- gCCGCGGCGagcGCGCUgcgcgaggcggcUGAGgcgcUGCGGGCCGg -3'
miRNA:   3'- -GGUGCCGU---UGCGA------------AUUC----AUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 83037 0.79 0.373264
Target:  5'- cCCGCGGCcgcuaguGCGCUUGGGccgcgGCGcGGCCGa -3'
miRNA:   3'- -GGUGCCGu------UGCGAAUUCa----UGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 64464 0.78 0.381584
Target:  5'- cCCGCGGCGGCGCg-----GgGGGCCGa -3'
miRNA:   3'- -GGUGCCGUUGCGaauucaUgCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 19742 0.78 0.390028
Target:  5'- aCGCGGCGGgcCGCUUAgcgggaaggcggGGUGCGGGCuCGg -3'
miRNA:   3'- gGUGCCGUU--GCGAAU------------UCAUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 55762 0.78 0.398592
Target:  5'- gCGCGGCcgUGCccUGAGUACGGGCuCGg -3'
miRNA:   3'- gGUGCCGuuGCGa-AUUCAUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 68791 0.78 0.398592
Target:  5'- gCCGCGGCGGcCGCgcGA--GCGGGCCGa -3'
miRNA:   3'- -GGUGCCGUU-GCGaaUUcaUGCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.