Results 1 - 20 of 488 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 6966 | 0.84 | 0.191128 |
Target: 5'- gUCGCGGCGGCGCUUccGcccGCGGGCCGc -3' miRNA: 3'- -GGUGCCGUUGCGAAuuCa--UGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 124958 | 0.75 | 0.56014 |
Target: 5'- gCgGCGGCGGCGCgcaaAAGccggcgcaGCGGGCCGg -3' miRNA: 3'- -GgUGCCGUUGCGaa--UUCa-------UGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 56079 | 0.75 | 0.539873 |
Target: 5'- gCGCGGCugAGCGCgcccgGGGUGCGgGGCUGg -3' miRNA: 3'- gGUGCCG--UUGCGaa---UUCAUGC-CCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 100504 | 0.75 | 0.539873 |
Target: 5'- aCACGGCggUGCgguguggUGGGcUGCGGGUCGc -3' miRNA: 3'- gGUGCCGuuGCGa------AUUC-AUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 69239 | 0.75 | 0.533841 |
Target: 5'- gCCGCGGCAACGCUggccuacuacGCGcGGCUGg -3' miRNA: 3'- -GGUGCCGUUGCGAauuca-----UGC-CCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 26026 | 0.76 | 0.490414 |
Target: 5'- gUAUGGCGGCaGCaaaAGGUGCGGGCCa -3' miRNA: 3'- gGUGCCGUUG-CGaa-UUCAUGCCCGGc -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 19879 | 0.76 | 0.490414 |
Target: 5'- aUCAUGGCGGCGCUg----GCGGGCgCGa -3' miRNA: 3'- -GGUGCCGUUGCGAauucaUGCCCG-GC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 74682 | 0.76 | 0.490414 |
Target: 5'- gCCGCGGCAggacggcggccgGCGCUUuugccuGUACGGGgCGc -3' miRNA: 3'- -GGUGCCGU------------UGCGAAuu----CAUGCCCgGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 34402 | 0.76 | 0.484617 |
Target: 5'- gCCGCGGCAgacgcgGCGCUgggggcggcggaagAAGUAcuuCGGGCCGc -3' miRNA: 3'- -GGUGCCGU------UGCGAa-------------UUCAU---GCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 66244 | 0.77 | 0.434026 |
Target: 5'- gCGCGGCGGCGCUcggcaUGCuGGGCCGg -3' miRNA: 3'- gGUGCCGUUGCGAauuc-AUG-CCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 61944 | 0.77 | 0.432211 |
Target: 5'- -aGCGGCGGCGCggcccgcGCGGGCCGa -3' miRNA: 3'- ggUGCCGUUGCGaauuca-UGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 131262 | 0.78 | 0.424995 |
Target: 5'- gCCGCGGCGccGCGCg-----ACGGGCCGc -3' miRNA: 3'- -GGUGCCGU--UGCGaauucaUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 68791 | 0.78 | 0.398592 |
Target: 5'- gCCGCGGCGGcCGCgcGA--GCGGGCCGa -3' miRNA: 3'- -GGUGCCGUU-GCGaaUUcaUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 55762 | 0.78 | 0.398592 |
Target: 5'- gCGCGGCcgUGCccUGAGUACGGGCuCGg -3' miRNA: 3'- gGUGCCGuuGCGa-AUUCAUGCCCG-GC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 19742 | 0.78 | 0.390028 |
Target: 5'- aCGCGGCGGgcCGCUUAgcgggaaggcggGGUGCGGGCuCGg -3' miRNA: 3'- gGUGCCGUU--GCGAAU------------UCAUGCCCG-GC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 64464 | 0.78 | 0.381584 |
Target: 5'- cCCGCGGCGGCGCg-----GgGGGCCGa -3' miRNA: 3'- -GGUGCCGUUGCGaauucaUgCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 83037 | 0.79 | 0.373264 |
Target: 5'- cCCGCGGCcgcuaguGCGCUUGGGccgcgGCGcGGCCGa -3' miRNA: 3'- -GGUGCCGu------UGCGAAUUCa----UGC-CCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 34147 | 0.81 | 0.283287 |
Target: 5'- gCCGCGGCGagcGCGCUgcgcgaggcggcUGAGgcgcUGCGGGCCGg -3' miRNA: 3'- -GGUGCCGU---UGCGA------------AUUC----AUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 124429 | 0.81 | 0.276617 |
Target: 5'- cUCGCuGGCGGCGCUUGgccGGcGCGGGCCGc -3' miRNA: 3'- -GGUG-CCGUUGCGAAU---UCaUGCCCGGC- -5' |
|||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 115556 | 1.1 | 0.003969 |
Target: 5'- gCCACGGCAACGCUUAAGUACGGGCCGc -3' miRNA: 3'- -GGUGCCGUUGCGAAUUCAUGCCCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home