Results 1 - 20 of 488 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6671 | 5' | -53.7 | NC_001847.1 | + | 60856 | 0.66 | 0.966717 |
Target: 5'- uCCGCGcccgccgaggccagcGCAGCGCgc--GcGCGGGCCc -3' miRNA: 3'- -GGUGC---------------CGUUGCGaauuCaUGCCCGGc -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 18238 | 0.66 | 0.962031 |
Target: 5'- gCGCGuGCucgcguGGCGCUUGaAGuUGCGGGUCa -3' miRNA: 3'- gGUGC-CG------UUGCGAAU-UC-AUGCCCGGc -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 79420 | 0.66 | 0.962031 |
Target: 5'- aCCACcGUGGCGCccGAGggcgGCGGGCa- -3' miRNA: 3'- -GGUGcCGUUGCGaaUUCa---UGCCCGgc -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 21616 | 0.81 | 0.276617 |
Target: 5'- cUCGCuGGCGGCGCUUGgccGGcGCGGGCCGc -3' miRNA: 3'- -GGUG-CCGUUGCGAAU---UCaUGCCCGGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 107140 | 0.66 | 0.965422 |
Target: 5'- gCGCGGCAcgccgcGCGCUgcAGcGCGGcCCa -3' miRNA: 3'- gGUGCCGU------UGCGAauUCaUGCCcGGc -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 58459 | 0.66 | 0.965422 |
Target: 5'- gCCGCaGCGccGCGCgcgUGA--ACGGGUCGa -3' miRNA: 3'- -GGUGcCGU--UGCGa--AUUcaUGCCCGGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 28150 | 0.66 | 0.965422 |
Target: 5'- aCUGCaGCGACGCc-GGGUccgaggacaGCGGGCCc -3' miRNA: 3'- -GGUGcCGUUGCGaaUUCA---------UGCCCGGc -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 50520 | 0.66 | 0.965422 |
Target: 5'- gCCGCGGCAugGCcccgcucgAAGgcgacgcaGCGGcGCUGc -3' miRNA: 3'- -GGUGCCGUugCGaa------UUCa-------UGCC-CGGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 23945 | 0.66 | 0.963414 |
Target: 5'- uCC-CGGCAccccaucgaaacccgGCGUUgguGGUugccAUGGGCCGg -3' miRNA: 3'- -GGuGCCGU---------------UGCGAau-UCA----UGCCCGGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 42733 | 0.66 | 0.962031 |
Target: 5'- -gGCGGCcGCGCg--GGcgGCGGGgCGg -3' miRNA: 3'- ggUGCCGuUGCGaauUCa-UGCCCgGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 57907 | 0.66 | 0.962031 |
Target: 5'- cCCGC-GCGAcCGCgccAAGUcCGGGCCc -3' miRNA: 3'- -GGUGcCGUU-GCGaa-UUCAuGCCCGGc -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 117527 | 0.66 | 0.963414 |
Target: 5'- gCGCGGCGACGaCgaggccGUgcgcaaccccuuuccGCGGGCCc -3' miRNA: 3'- gGUGCCGUUGC-Gaauu--CA---------------UGCCCGGc -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 73029 | 0.66 | 0.966717 |
Target: 5'- gCCGCGGCAGCggccgcggacaaccuGCUggcgAAGcaacgcgccGCGGGCgCGg -3' miRNA: 3'- -GGUGCCGUUG---------------CGAa---UUCa--------UGCCCG-GC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 123176 | 0.66 | 0.962031 |
Target: 5'- gCGCGGCGGCGCU------CaGGCCGc -3' miRNA: 3'- gGUGCCGUUGCGAauucauGcCCGGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 2433 | 0.66 | 0.965422 |
Target: 5'- cCCGCGGCGGC-Cg-----GCaGGGCCGc -3' miRNA: 3'- -GGUGCCGUUGcGaauucaUG-CCCGGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 1135 | 0.66 | 0.965422 |
Target: 5'- aCCAgCGGCGGCGCcucGGcGCGcGGCUc -3' miRNA: 3'- -GGU-GCCGUUGCGaauUCaUGC-CCGGc -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 52488 | 0.66 | 0.962031 |
Target: 5'- gCGCGGCGcgccGCGCUcgcGGGUuCGGGUgGc -3' miRNA: 3'- gGUGCCGU----UGCGAa--UUCAuGCCCGgC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 10581 | 0.66 | 0.962031 |
Target: 5'- cCgGCGGCccccccGCGCgc----GCGGGCCGg -3' miRNA: 3'- -GgUGCCGu-----UGCGaauucaUGCCCGGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 117290 | 0.66 | 0.965422 |
Target: 5'- aCC-CGGCGGCGCUggcaacGCGaGCCGc -3' miRNA: 3'- -GGuGCCGUUGCGAauuca-UGCcCGGC- -5' |
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6671 | 5' | -53.7 | NC_001847.1 | + | 32334 | 0.66 | 0.965422 |
Target: 5'- gCGCGGCGcgGCGCg-GAGg--GGGCCc -3' miRNA: 3'- gGUGCCGU--UGCGaaUUCaugCCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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