miRNA display CGI


Results 1 - 20 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6671 5' -53.7 NC_001847.1 + 135023 0.66 0.950492
Target:  5'- cCCGCgGGCGGgGCcgGGGcGCGGGgCGc -3'
miRNA:   3'- -GGUG-CCGUUgCGaaUUCaUGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 134898 0.66 0.95457
Target:  5'- cCCugGGCGccggGCGUcgGGGcGCGaGGCCc -3'
miRNA:   3'- -GGugCCGU----UGCGaaUUCaUGC-CCGGc -5'
6671 5' -53.7 NC_001847.1 + 134771 0.7 0.810301
Target:  5'- cCgGCGcGCGGCGCgcGGG-GCGGGCCc -3'
miRNA:   3'- -GgUGC-CGUUGCGaaUUCaUGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 134521 0.67 0.931777
Target:  5'- gCCGCGGCGcAUGUgguGGUacACGGGgCGc -3'
miRNA:   3'- -GGUGCCGU-UGCGaauUCA--UGCCCgGC- -5'
6671 5' -53.7 NC_001847.1 + 134480 0.66 0.962031
Target:  5'- gCGCGGcCAACGaagUGcacggguguAGUGUGGGCCGu -3'
miRNA:   3'- gGUGCC-GUUGCga-AU---------UCAUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 134376 0.66 0.95457
Target:  5'- gC-CGGCGcCGCc--GGcgGCGGGCCGg -3'
miRNA:   3'- gGuGCCGUuGCGaauUCa-UGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 134258 0.73 0.653064
Target:  5'- gCCGCGGCGGC-Ccc-GGcGCGGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGcGaauUCaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 134205 0.66 0.95457
Target:  5'- -aGCGGC-GCGC------GCGGGCCGa -3'
miRNA:   3'- ggUGCCGuUGCGaauucaUGCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 134040 0.7 0.81911
Target:  5'- gCCGCGGCGGCGCcgcc---CGcGGCCGc -3'
miRNA:   3'- -GGUGCCGUUGCGaauucauGC-CCGGC- -5'
6671 5' -53.7 NC_001847.1 + 133987 0.69 0.85252
Target:  5'- gCGCGGCcGCGCUgccgGAGccGCGcGCCGa -3'
miRNA:   3'- gGUGCCGuUGCGAa---UUCa-UGCcCGGC- -5'
6671 5' -53.7 NC_001847.1 + 133685 0.66 0.950071
Target:  5'- gCCGCGGCGgcaacguGCGCUacacGGUGgccacgcgccUGGGCCc -3'
miRNA:   3'- -GGUGCCGU-------UGCGAau--UCAU----------GCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 133619 0.69 0.851723
Target:  5'- -gGCGGCAcaagcgcGCGCggGGGgaacacaACGGGCCa -3'
miRNA:   3'- ggUGCCGU-------UGCGaaUUCa------UGCCCGGc -5'
6671 5' -53.7 NC_001847.1 + 133303 0.69 0.85252
Target:  5'- gCCugGGCcgGGCGCU--GG-ACGGGCgCGc -3'
miRNA:   3'- -GGugCCG--UUGCGAauUCaUGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 133285 0.67 0.920953
Target:  5'- gCCGCGcGguGCGCUccggcgcaGAGUGCGuGCCGc -3'
miRNA:   3'- -GGUGC-CguUGCGAa-------UUCAUGCcCGGC- -5'
6671 5' -53.7 NC_001847.1 + 132750 0.66 0.961326
Target:  5'- gCCACGGCcgAGCGCgucaccgccGUcuucGCGGGCgCGc -3'
miRNA:   3'- -GGUGCCG--UUGCGaauu-----CA----UGCCCG-GC- -5'
6671 5' -53.7 NC_001847.1 + 132176 0.67 0.941619
Target:  5'- gCCcCGGCGGCGCUgcgcgccGAG-GCGGccGCCGc -3'
miRNA:   3'- -GGuGCCGUUGCGAa------UUCaUGCC--CGGC- -5'
6671 5' -53.7 NC_001847.1 + 132139 0.72 0.704455
Target:  5'- aUugGGCGGCGCUgcugccgcgcaGGGUG-GGGCCGg -3'
miRNA:   3'- gGugCCGUUGCGAa----------UUCAUgCCCGGC- -5'
6671 5' -53.7 NC_001847.1 + 131923 0.79 0.373264
Target:  5'- gCCGCGGCGGCGCggAGGcACGuGcGCCGg -3'
miRNA:   3'- -GGUGCCGUUGCGaaUUCaUGC-C-CGGC- -5'
6671 5' -53.7 NC_001847.1 + 131774 0.67 0.931777
Target:  5'- gCGCGGCucgGCGCgcgGAuUGCGGcgGCCGg -3'
miRNA:   3'- gGUGCCGu--UGCGaa-UUcAUGCC--CGGC- -5'
6671 5' -53.7 NC_001847.1 + 131538 0.66 0.950492
Target:  5'- gCCAUGGCcuggcugcagAGCGCg-AAGcucGCGGGCCc -3'
miRNA:   3'- -GGUGCCG----------UUGCGaaUUCa--UGCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.