miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 5' -55.3 NC_001847.1 + 116111 0.67 0.852196
Target:  5'- cGCC--GGGCC-UGCCGGCGgGGUCAc -3'
miRNA:   3'- uUGGaaCCUGGuGCGGUUGCaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 53322 0.67 0.852196
Target:  5'- gGACCUcgcgcUGGACCACGCCGcaGCGg----- -3'
miRNA:   3'- -UUGGA-----ACCUGGUGCGGU--UGCaccagu -5'
6673 5' -55.3 NC_001847.1 + 43781 0.67 0.852196
Target:  5'- uGCCggugcUGGACgcgCGCGCCGGCGcgccGGUCGa -3'
miRNA:   3'- uUGGa----ACCUG---GUGCGGUUGCa---CCAGU- -5'
6673 5' -55.3 NC_001847.1 + 112298 0.67 0.844055
Target:  5'- aAACCcaGGACCGCGCCG--GUGGa-- -3'
miRNA:   3'- -UUGGaaCCUGGUGCGGUugCACCagu -5'
6673 5' -55.3 NC_001847.1 + 30185 0.68 0.809555
Target:  5'- -----cGGACCugGCCGACGcGGUg- -3'
miRNA:   3'- uuggaaCCUGGugCGGUUGCaCCAgu -5'
6673 5' -55.3 NC_001847.1 + 80759 0.68 0.781885
Target:  5'- --aCUUGGuCCGCGCCGGCGcGGa-- -3'
miRNA:   3'- uugGAACCuGGUGCGGUUGCaCCagu -5'
6673 5' -55.3 NC_001847.1 + 45895 0.68 0.809555
Target:  5'- aAGCCgaGGACCugGCCGGucCGUcGGUa- -3'
miRNA:   3'- -UUGGaaCCUGGugCGGUU--GCA-CCAgu -5'
6673 5' -55.3 NC_001847.1 + 128601 0.68 0.800488
Target:  5'- aAACCUUGGugUugGCCAcgcgcuucuACGUGuUCc -3'
miRNA:   3'- -UUGGAACCugGugCGGU---------UGCACcAGu -5'
6673 5' -55.3 NC_001847.1 + 87017 0.68 0.79497
Target:  5'- uACC-UGGGCCGCGCCucgcggGACagccuuucggucgcgGUGGUCGa -3'
miRNA:   3'- uUGGaACCUGGUGCGG------UUG---------------CACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 83402 0.68 0.791261
Target:  5'- -uCCUUGGagagcaGCCGCGCCGGCauuUGGUUg -3'
miRNA:   3'- uuGGAACC------UGGUGCGGUUGc--ACCAGu -5'
6673 5' -55.3 NC_001847.1 + 67579 0.69 0.772369
Target:  5'- aGGCUUUGGcCCGCGCCGAUcUGGg-- -3'
miRNA:   3'- -UUGGAACCuGGUGCGGUUGcACCagu -5'
6673 5' -55.3 NC_001847.1 + 19893 0.69 0.743072
Target:  5'- cAACCggcGGAgUggGUCAGCGUGGUCGa -3'
miRNA:   3'- -UUGGaa-CCUgGugCGGUUGCACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 27863 0.69 0.742079
Target:  5'- gGGCCcugUGGGCCGCGCUcgagcgguuggauGGCGaGGUCGc -3'
miRNA:   3'- -UUGGa--ACCUGGUGCGG-------------UUGCaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 87352 0.69 0.723018
Target:  5'- cGGCCgaGGGCCugGCCGAgcacccggcCGUGGcCGc -3'
miRNA:   3'- -UUGGaaCCUGGugCGGUU---------GCACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 85063 0.7 0.712864
Target:  5'- cAGCCUUGG-CCGCGCC--CG-GGUCc -3'
miRNA:   3'- -UUGGAACCuGGUGCGGuuGCaCCAGu -5'
6673 5' -55.3 NC_001847.1 + 94818 0.71 0.650764
Target:  5'- cGCCgaGGGCCGCaGCCGcuuUGUGGUCu -3'
miRNA:   3'- uUGGaaCCUGGUG-CGGUu--GCACCAGu -5'
6673 5' -55.3 NC_001847.1 + 100337 0.72 0.557088
Target:  5'- cGGCCU---GCCGCGCCAGCGgccgcgGGUCGu -3'
miRNA:   3'- -UUGGAaccUGGUGCGGUUGCa-----CCAGU- -5'
6673 5' -55.3 NC_001847.1 + 18822 0.73 0.496716
Target:  5'- cGGCCUUcagcuuGACCACGUUGGCGUGGUCc -3'
miRNA:   3'- -UUGGAAc-----CUGGUGCGGUUGCACCAGu -5'
6673 5' -55.3 NC_001847.1 + 94409 0.74 0.477238
Target:  5'- uACCgcgacgGGGCCAUGCCcguCGUGGUCu -3'
miRNA:   3'- uUGGaa----CCUGGUGCGGuu-GCACCAGu -5'
6673 5' -55.3 NC_001847.1 + 32987 0.79 0.259852
Target:  5'- gAGCUUgcggcGGGCCGCGCCGcCGUGGUCGc -3'
miRNA:   3'- -UUGGAa----CCUGGUGCGGUuGCACCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.