miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 5' -55.3 NC_001847.1 + 112298 0.67 0.844055
Target:  5'- aAACCcaGGACCGCGCCG--GUGGa-- -3'
miRNA:   3'- -UUGGaaCCUGGUGCGGUugCACCagu -5'
6673 5' -55.3 NC_001847.1 + 43781 0.67 0.852196
Target:  5'- uGCCggugcUGGACgcgCGCGCCGGCGcgccGGUCGa -3'
miRNA:   3'- uUGGa----ACCUG---GUGCGGUUGCa---CCAGU- -5'
6673 5' -55.3 NC_001847.1 + 45895 0.68 0.809555
Target:  5'- aAGCCgaGGACCugGCCGGucCGUcGGUa- -3'
miRNA:   3'- -UUGGaaCCUGGugCGGUU--GCA-CCAgu -5'
6673 5' -55.3 NC_001847.1 + 128601 0.68 0.800488
Target:  5'- aAACCUUGGugUugGCCAcgcgcuucuACGUGuUCc -3'
miRNA:   3'- -UUGGAACCugGugCGGU---------UGCACcAGu -5'
6673 5' -55.3 NC_001847.1 + 87017 0.68 0.79497
Target:  5'- uACC-UGGGCCGCGCCucgcggGACagccuuucggucgcgGUGGUCGa -3'
miRNA:   3'- uUGGaACCUGGUGCGG------UUG---------------CACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 83402 0.68 0.791261
Target:  5'- -uCCUUGGagagcaGCCGCGCCGGCauuUGGUUg -3'
miRNA:   3'- uuGGAACC------UGGUGCGGUUGc--ACCAGu -5'
6673 5' -55.3 NC_001847.1 + 67579 0.69 0.772369
Target:  5'- aGGCUUUGGcCCGCGCCGAUcUGGg-- -3'
miRNA:   3'- -UUGGAACCuGGUGCGGUUGcACCagu -5'
6673 5' -55.3 NC_001847.1 + 19893 0.69 0.743072
Target:  5'- cAACCggcGGAgUggGUCAGCGUGGUCGa -3'
miRNA:   3'- -UUGGaa-CCUgGugCGGUUGCACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 85063 0.7 0.712864
Target:  5'- cAGCCUUGG-CCGCGCC--CG-GGUCc -3'
miRNA:   3'- -UUGGAACCuGGUGCGGuuGCaCCAGu -5'
6673 5' -55.3 NC_001847.1 + 100337 0.72 0.557088
Target:  5'- cGGCCU---GCCGCGCCAGCGgccgcgGGUCGu -3'
miRNA:   3'- -UUGGAaccUGGUGCGGUUGCa-----CCAGU- -5'
6673 5' -55.3 NC_001847.1 + 9485 0.67 0.844055
Target:  5'- aAACCcaGGACCGCGCCG--GUGGa-- -3'
miRNA:   3'- -UUGGaaCCUGGUGCGGUugCACCagu -5'
6673 5' -55.3 NC_001847.1 + 63109 0.67 0.844055
Target:  5'- cGCCccgGGGCCGcCGCCGcgcACG-GGUCGg -3'
miRNA:   3'- uUGGaa-CCUGGU-GCGGU---UGCaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 108511 0.66 0.903008
Target:  5'- cAGCgCUUGGAgcacgagggcuuUCGCGCCcACGUGGcCGu -3'
miRNA:   3'- -UUG-GAACCU------------GGUGCGGuUGCACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 88546 0.66 0.896449
Target:  5'- cGCCgcGaGGCCGCGCCGGCG-GGg-- -3'
miRNA:   3'- uUGGaaC-CUGGUGCGGUUGCaCCagu -5'
6673 5' -55.3 NC_001847.1 + 58576 0.66 0.896449
Target:  5'- aGAUCggGGGCCGgGCCGccggcuGCGUGGgCAg -3'
miRNA:   3'- -UUGGaaCCUGGUgCGGU------UGCACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 44771 0.66 0.896449
Target:  5'- gGGCCgUGGuCCGCGuCCAGCa-GGUCGc -3'
miRNA:   3'- -UUGGaACCuGGUGC-GGUUGcaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 128036 0.67 0.867847
Target:  5'- gAGCCc--GGCCgugGCGCCuACGUGGUCu -3'
miRNA:   3'- -UUGGaacCUGG---UGCGGuUGCACCAGu -5'
6673 5' -55.3 NC_001847.1 + 20726 0.67 0.860129
Target:  5'- cGCUggcGGACCgcuucuaccucaACGCCGACGUGGaUCc -3'
miRNA:   3'- uUGGaa-CCUGG------------UGCGGUUGCACC-AGu -5'
6673 5' -55.3 NC_001847.1 + 91298 0.67 0.852196
Target:  5'- cAGCCUcGGGCUccagcaGCGCCAGCGcGG-CAa -3'
miRNA:   3'- -UUGGAaCCUGG------UGCGGUUGCaCCaGU- -5'
6673 5' -55.3 NC_001847.1 + 20326 0.67 0.849775
Target:  5'- cGCCgagGGACCAuguacCGCCAgggcacccccaaccGCGUGGUg- -3'
miRNA:   3'- uUGGaa-CCUGGU-----GCGGU--------------UGCACCAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.