miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 5' -55.3 NC_001847.1 + 102086 0.66 0.909323
Target:  5'- -----cGGGCCGCGCgCGACccGGUCAa -3'
miRNA:   3'- uuggaaCCUGGUGCG-GUUGcaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 70273 0.67 0.867847
Target:  5'- uACCgcgaGGACgCGCGCCuGGCGgGGUCGc -3'
miRNA:   3'- uUGGaa--CCUG-GUGCGG-UUGCaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 75717 0.67 0.867847
Target:  5'- gGGCCgcGGGCCGcCGCCGugGaUGGcCGa -3'
miRNA:   3'- -UUGGaaCCUGGU-GCGGUugC-ACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 4173 0.66 0.875343
Target:  5'- gGGCCUuguuuUGGGCCGCGCgccCGUGGg-- -3'
miRNA:   3'- -UUGGA-----ACCUGGUGCGguuGCACCagu -5'
6673 5' -55.3 NC_001847.1 + 30719 0.66 0.875343
Target:  5'- -uCC-UGGAcgcCCGCGCgGACGUGGcCGa -3'
miRNA:   3'- uuGGaACCU---GGUGCGgUUGCACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 84010 0.66 0.875343
Target:  5'- uGCUgaucGCCACGCCuGugGUGGUCGa -3'
miRNA:   3'- uUGGaaccUGGUGCGG-UugCACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 63773 0.66 0.875343
Target:  5'- aGGCCcgGaGACCGCGCgGACGcgggcuuucUGGUCGc -3'
miRNA:   3'- -UUGGaaC-CUGGUGCGgUUGC---------ACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 99431 0.66 0.889649
Target:  5'- uAGCCgcauacGCUGCGCCAGCGUGGg-- -3'
miRNA:   3'- -UUGGaacc--UGGUGCGGUUGCACCagu -5'
6673 5' -55.3 NC_001847.1 + 59431 0.66 0.896449
Target:  5'- cGCCccGGGCCugGCUGACGaccaacUGGUUg -3'
miRNA:   3'- uUGGaaCCUGGugCGGUUGC------ACCAGu -5'
6673 5' -55.3 NC_001847.1 + 116111 0.67 0.852196
Target:  5'- cGCC--GGGCC-UGCCGGCGgGGUCAc -3'
miRNA:   3'- uUGGaaCCUGGuGCGGUUGCaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 53322 0.67 0.852196
Target:  5'- gGACCUcgcgcUGGACCACGCCGcaGCGg----- -3'
miRNA:   3'- -UUGGA-----ACCUGGUGCGGU--UGCaccagu -5'
6673 5' -55.3 NC_001847.1 + 43781 0.67 0.852196
Target:  5'- uGCCggugcUGGACgcgCGCGCCGGCGcgccGGUCGa -3'
miRNA:   3'- uUGGa----ACCUG---GUGCGGUUGCa---CCAGU- -5'
6673 5' -55.3 NC_001847.1 + 32987 0.79 0.259852
Target:  5'- gAGCUUgcggcGGGCCGCGCCGcCGUGGUCGc -3'
miRNA:   3'- -UUGGAa----CCUGGUGCGGUuGCACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 94409 0.74 0.477238
Target:  5'- uACCgcgacgGGGCCAUGCCcguCGUGGUCu -3'
miRNA:   3'- uUGGaa----CCUGGUGCGGuu-GCACCAGu -5'
6673 5' -55.3 NC_001847.1 + 94818 0.71 0.650764
Target:  5'- cGCCgaGGGCCGCaGCCGcuuUGUGGUCu -3'
miRNA:   3'- uUGGaaCCUGGUG-CGGUu--GCACCAGu -5'
6673 5' -55.3 NC_001847.1 + 87352 0.69 0.723018
Target:  5'- cGGCCgaGGGCCugGCCGAgcacccggcCGUGGcCGc -3'
miRNA:   3'- -UUGGaaCCUGGugCGGUU---------GCACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 27863 0.69 0.742079
Target:  5'- gGGCCcugUGGGCCGCGCUcgagcgguuggauGGCGaGGUCGc -3'
miRNA:   3'- -UUGGa--ACCUGGUGCGG-------------UUGCaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 80759 0.68 0.781885
Target:  5'- --aCUUGGuCCGCGCCGGCGcGGa-- -3'
miRNA:   3'- uugGAACCuGGUGCGGUUGCaCCagu -5'
6673 5' -55.3 NC_001847.1 + 30185 0.68 0.809555
Target:  5'- -----cGGACCugGCCGACGcGGUg- -3'
miRNA:   3'- uuggaaCCUGGugCGGUUGCaCCAgu -5'
6673 5' -55.3 NC_001847.1 + 112298 0.67 0.844055
Target:  5'- aAACCcaGGACCGCGCCG--GUGGa-- -3'
miRNA:   3'- -UUGGaaCCUGGUGCGGUugCACCagu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.