miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 88904 0.67 0.736591
Target:  5'- cCGGGGGCggcucccUUGCGCGCGCGCggCUCUGc- -3'
miRNA:   3'- -GCUCCUG-------GACGUGUGCGUG--GAGACcu -5'
6674 3' -57.7 NC_001847.1 + 53802 0.68 0.727787
Target:  5'- gCGAGGAggUCUGCGCccccugGCGCGCCggagCgGGGg -3'
miRNA:   3'- -GCUCCU--GGACGUG------UGCGUGGa---GaCCU- -5'
6674 3' -57.7 NC_001847.1 + 13435 0.68 0.727787
Target:  5'- -cGGGGCCUGCGCugGCugUaUCUagcGGGc -3'
miRNA:   3'- gcUCCUGGACGUGugCGugG-AGA---CCU- -5'
6674 3' -57.7 NC_001847.1 + 87009 0.68 0.727787
Target:  5'- cCGGcGGuuACCUGgGC-CGCGCCUCgcgGGAc -3'
miRNA:   3'- -GCU-CC--UGGACgUGuGCGUGGAGa--CCU- -5'
6674 3' -57.7 NC_001847.1 + 97459 0.68 0.727787
Target:  5'- aCGAGGuCCaGCGCGuugacggucUGCACCUCgcUGGGc -3'
miRNA:   3'- -GCUCCuGGaCGUGU---------GCGUGGAG--ACCU- -5'
6674 3' -57.7 NC_001847.1 + 36303 0.68 0.727787
Target:  5'- --uGGugCUGCGgAUGCGCCUCUa-- -3'
miRNA:   3'- gcuCCugGACGUgUGCGUGGAGAccu -5'
6674 3' -57.7 NC_001847.1 + 71742 0.68 0.727787
Target:  5'- -aAGGACCUGCuggagcacuuGCACGCGCUgcggcggcUCgUGGAc -3'
miRNA:   3'- gcUCCUGGACG----------UGUGCGUGG--------AG-ACCU- -5'
6674 3' -57.7 NC_001847.1 + 2191 0.68 0.717926
Target:  5'- uGGGcGGCgUGCGgGCGCACCUCa--- -3'
miRNA:   3'- gCUC-CUGgACGUgUGCGUGGAGaccu -5'
6674 3' -57.7 NC_001847.1 + 131575 0.68 0.717926
Target:  5'- --cGGACCUGCAgcugGCGCGCCUgCUGc- -3'
miRNA:   3'- gcuCCUGGACGUg---UGCGUGGA-GACcu -5'
6674 3' -57.7 NC_001847.1 + 80003 0.68 0.717926
Target:  5'- gGGGGGCuCUaCGCGCGCGCgUUUGGc -3'
miRNA:   3'- gCUCCUG-GAcGUGUGCGUGgAGACCu -5'
6674 3' -57.7 NC_001847.1 + 28762 0.68 0.717926
Target:  5'- --cGGACCUGCAgcugGCGCGCCUgCUGc- -3'
miRNA:   3'- gcuCCUGGACGUg---UGCGUGGA-GACcu -5'
6674 3' -57.7 NC_001847.1 + 47562 0.68 0.707992
Target:  5'- gCGGGGAgcCCggcggccGCGCACGCGCCga-GGAa -3'
miRNA:   3'- -GCUCCU--GGa------CGUGUGCGUGGagaCCU- -5'
6674 3' -57.7 NC_001847.1 + 32002 0.68 0.697995
Target:  5'- gCGAGGACCUuCGCGCGCcggcggcccGCgCUCgcgcggGGAa -3'
miRNA:   3'- -GCUCCUGGAcGUGUGCG---------UG-GAGa-----CCU- -5'
6674 3' -57.7 NC_001847.1 + 95509 0.68 0.697995
Target:  5'- cCGuGGGCCUgGCGgGCGCGCCaggcuugcccCUGGGg -3'
miRNA:   3'- -GCuCCUGGA-CGUgUGCGUGGa---------GACCU- -5'
6674 3' -57.7 NC_001847.1 + 51325 0.68 0.697995
Target:  5'- aCGAGGAUCUGCuugaaguuCGCGUGCCgcgggUUGGc -3'
miRNA:   3'- -GCUCCUGGACGu-------GUGCGUGGa----GACCu -5'
6674 3' -57.7 NC_001847.1 + 129029 0.68 0.697995
Target:  5'- gCGAGGcGCUcGCGC-CGCGCCUCgcgGGc -3'
miRNA:   3'- -GCUCC-UGGaCGUGuGCGUGGAGa--CCu -5'
6674 3' -57.7 NC_001847.1 + 101487 0.68 0.687942
Target:  5'- gCGcGGGCCgcggccacgcGCGCGCGCGCCUCgcGGu -3'
miRNA:   3'- -GCuCCUGGa---------CGUGUGCGUGGAGa-CCu -5'
6674 3' -57.7 NC_001847.1 + 82271 0.68 0.687942
Target:  5'- ---cGACCUGUACGCGCucggccacGCCUugCUGGAg -3'
miRNA:   3'- gcucCUGGACGUGUGCG--------UGGA--GACCU- -5'
6674 3' -57.7 NC_001847.1 + 35052 0.68 0.677844
Target:  5'- gCGAcGGGgCUGCugACGUucgccGCCUCgGGAg -3'
miRNA:   3'- -GCU-CCUgGACGugUGCG-----UGGAGaCCU- -5'
6674 3' -57.7 NC_001847.1 + 132889 0.68 0.677844
Target:  5'- cCGAGGGCC-GC-CGCGuCACCUg-GGAg -3'
miRNA:   3'- -GCUCCUGGaCGuGUGC-GUGGAgaCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.