miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 27059 0.66 0.803842
Target:  5'- aGAGGcCCgcagccccccgggcgGCAC-CGCGCCcacgCUGGAg -3'
miRNA:   3'- gCUCCuGGa--------------CGUGuGCGUGGa---GACCU- -5'
6674 3' -57.7 NC_001847.1 + 82712 0.66 0.802067
Target:  5'- gCGAagcGGGCCcGCuucgagcucgacaGCGCGCGCCgcccgcgCUGGAg -3'
miRNA:   3'- -GCU---CCUGGaCG-------------UGUGCGUGGa------GACCU- -5'
6674 3' -57.7 NC_001847.1 + 91535 0.66 0.794005
Target:  5'- uGAGGGCCgugGCcaGCACcggccccaGCGCCacgCUGGGg -3'
miRNA:   3'- gCUCCUGGa--CG--UGUG--------CGUGGa--GACCU- -5'
6674 3' -57.7 NC_001847.1 + 77630 0.67 0.784909
Target:  5'- gCGAGGACg-GCGCGC-CGCCcgUGGAg -3'
miRNA:   3'- -GCUCCUGgaCGUGUGcGUGGagACCU- -5'
6674 3' -57.7 NC_001847.1 + 26974 0.67 0.784909
Target:  5'- uGAGGugC-GCGCGCaGCGCgUCUGcGGc -3'
miRNA:   3'- gCUCCugGaCGUGUG-CGUGgAGAC-CU- -5'
6674 3' -57.7 NC_001847.1 + 64656 0.67 0.784909
Target:  5'- aCGuuGACgU-UGCGCGCACCUCUGGc -3'
miRNA:   3'- -GCucCUGgAcGUGUGCGUGGAGACCu -5'
6674 3' -57.7 NC_001847.1 + 70277 0.67 0.782154
Target:  5'- gCGAGGACgC-GCGCcuggcggggucgcgGCGCGCCgcgCUGGu -3'
miRNA:   3'- -GCUCCUG-GaCGUG--------------UGCGUGGa--GACCu -5'
6674 3' -57.7 NC_001847.1 + 76406 0.67 0.775678
Target:  5'- cCGGGGGCCgcgGCGgGgGCACCccgCggcgGGAg -3'
miRNA:   3'- -GCUCCUGGa--CGUgUgCGUGGa--Ga---CCU- -5'
6674 3' -57.7 NC_001847.1 + 128451 0.67 0.775678
Target:  5'- --cGGcCCUGCGCGCGCGCCcggCcGGc -3'
miRNA:   3'- gcuCCuGGACGUGUGCGUGGa--GaCCu -5'
6674 3' -57.7 NC_001847.1 + 104029 0.67 0.775678
Target:  5'- gCGAGGACCgaagGCAUGC-CACCgcgCUGc- -3'
miRNA:   3'- -GCUCCUGGa---CGUGUGcGUGGa--GACcu -5'
6674 3' -57.7 NC_001847.1 + 28419 0.67 0.775678
Target:  5'- gCGGGGcuuagcGCCcugGCGCACGCcGCCaaCUGGAa -3'
miRNA:   3'- -GCUCC------UGGa--CGUGUGCG-UGGa-GACCU- -5'
6674 3' -57.7 NC_001847.1 + 12552 0.67 0.772883
Target:  5'- gCGAGGACCuUGUgccagacgaggccuACGCGCACCUa--GAg -3'
miRNA:   3'- -GCUCCUGG-ACG--------------UGUGCGUGGAgacCU- -5'
6674 3' -57.7 NC_001847.1 + 64343 0.67 0.766318
Target:  5'- gCGuGG-CCUgGUACACGCGCUUCUcuaGGGc -3'
miRNA:   3'- -GCuCCuGGA-CGUGUGCGUGGAGA---CCU- -5'
6674 3' -57.7 NC_001847.1 + 37700 0.67 0.766318
Target:  5'- --uGGACCUcgucacGUGCGCGCugCUgCUGGGc -3'
miRNA:   3'- gcuCCUGGA------CGUGUGCGugGA-GACCU- -5'
6674 3' -57.7 NC_001847.1 + 57415 0.67 0.75684
Target:  5'- gGGcGGGCCUcGCACGCGCGCCa----- -3'
miRNA:   3'- gCU-CCUGGA-CGUGUGCGUGGagaccu -5'
6674 3' -57.7 NC_001847.1 + 70201 0.67 0.75684
Target:  5'- aCGGcGGACCagcUGCuGCGCGUGCUgCUGGAg -3'
miRNA:   3'- -GCU-CCUGG---ACG-UGUGCGUGGaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 109533 0.67 0.755887
Target:  5'- uCGuGcACUUGCGCgugcgugcucggaGCGUGCCUCUGGAc -3'
miRNA:   3'- -GCuCcUGGACGUG-------------UGCGUGGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 34622 0.67 0.753975
Target:  5'- cCGAGGaaguccggcGCCUGCGCgccgaggccgagcgGCGCGCCgagGGGg -3'
miRNA:   3'- -GCUCC---------UGGACGUG--------------UGCGUGGagaCCU- -5'
6674 3' -57.7 NC_001847.1 + 44911 0.67 0.753975
Target:  5'- aCGGGGGCgUGCGCgACGCgcgcgugcuguuuuACCgagacCUGGAc -3'
miRNA:   3'- -GCUCCUGgACGUG-UGCG--------------UGGa----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 35964 0.67 0.751101
Target:  5'- gCGAGGACCacgagggcgccaagGCGCGCGCAgCCgcgCUGc- -3'
miRNA:   3'- -GCUCCUGGa-------------CGUGUGCGU-GGa--GACcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.