miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 34703 0.76 0.277652
Target:  5'- gCGAGGACUUGCGCGC-CGCg-CUGGAg -3'
miRNA:   3'- -GCUCCUGGACGUGUGcGUGgaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 35052 0.68 0.677844
Target:  5'- gCGAcGGGgCUGCugACGUucgccGCCUCgGGAg -3'
miRNA:   3'- -GCU-CCUgGACGugUGCG-----UGGAGaCCU- -5'
6674 3' -57.7 NC_001847.1 + 35964 0.67 0.751101
Target:  5'- gCGAGGACCacgagggcgccaagGCGCGCGCAgCCgcgCUGc- -3'
miRNA:   3'- -GCUCCUGGa-------------CGUGUGCGU-GGa--GACcu -5'
6674 3' -57.7 NC_001847.1 + 36266 0.69 0.637163
Target:  5'- --uGGGCCgcccagGCGCACGCGCCcuUCcgGGAu -3'
miRNA:   3'- gcuCCUGGa-----CGUGUGCGUGG--AGa-CCU- -5'
6674 3' -57.7 NC_001847.1 + 36303 0.68 0.727787
Target:  5'- --uGGugCUGCGgAUGCGCCUCUa-- -3'
miRNA:   3'- gcuCCugGACGUgUGCGUGGAGAccu -5'
6674 3' -57.7 NC_001847.1 + 36473 0.72 0.475417
Target:  5'- -cGGGACCUGCACcuGCGCGggcgcguggcggccCUUCUGGGc -3'
miRNA:   3'- gcUCCUGGACGUG--UGCGU--------------GGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 37432 0.66 0.828852
Target:  5'- cCGGGcGACUUGCugGCGgCGCUg-UGGAc -3'
miRNA:   3'- -GCUC-CUGGACGugUGC-GUGGagACCU- -5'
6674 3' -57.7 NC_001847.1 + 37700 0.67 0.766318
Target:  5'- --uGGACCUcgucacGUGCGCGCugCUgCUGGGc -3'
miRNA:   3'- gcuCCUGGA------CGUGUGCGugGA-GACCU- -5'
6674 3' -57.7 NC_001847.1 + 38218 0.68 0.677844
Target:  5'- gGAGGcCCggGC-CGCGCGCCUCUa-- -3'
miRNA:   3'- gCUCCuGGa-CGuGUGCGUGGAGAccu -5'
6674 3' -57.7 NC_001847.1 + 42074 0.66 0.820387
Target:  5'- gCGGGGGCCUaCGCGuCGUGCagaaUCUGGu -3'
miRNA:   3'- -GCUCCUGGAcGUGU-GCGUGg---AGACCu -5'
6674 3' -57.7 NC_001847.1 + 44911 0.67 0.753975
Target:  5'- aCGGGGGCgUGCGCgACGCgcgcgugcuguuuuACCgagacCUGGAc -3'
miRNA:   3'- -GCUCCUGgACGUG-UGCG--------------UGGa----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 47562 0.68 0.707992
Target:  5'- gCGGGGAgcCCggcggccGCGCACGCGCCga-GGAa -3'
miRNA:   3'- -GCUCCU--GGa------CGUGUGCGUGGagaCCU- -5'
6674 3' -57.7 NC_001847.1 + 49998 0.7 0.616765
Target:  5'- aGAGGAgCCcGCGCGCcCACCgccugCUGGGc -3'
miRNA:   3'- gCUCCU-GGaCGUGUGcGUGGa----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 51325 0.68 0.697995
Target:  5'- aCGAGGAUCUGCuugaaguuCGCGUGCCgcgggUUGGc -3'
miRNA:   3'- -GCUCCUGGACGu-------GUGCGUGGa----GACCu -5'
6674 3' -57.7 NC_001847.1 + 52549 0.66 0.837139
Target:  5'- gGAGGGCgCgGCcgACAUGCugCgagagCUGGAg -3'
miRNA:   3'- gCUCCUG-GaCG--UGUGCGugGa----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 53383 0.7 0.586274
Target:  5'- gCGAGcGcGCCUGCcgaguuuuuuGCGCGCACCauggggCUGGAg -3'
miRNA:   3'- -GCUC-C-UGGACG----------UGUGCGUGGa-----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 53802 0.68 0.727787
Target:  5'- gCGAGGAggUCUGCGCccccugGCGCGCCggagCgGGGg -3'
miRNA:   3'- -GCUCCU--GGACGUG------UGCGUGGa---GaCCU- -5'
6674 3' -57.7 NC_001847.1 + 53936 0.66 0.820387
Target:  5'- cCGA--GCCUGCaucuacGCGCGCGCCggCUGGc -3'
miRNA:   3'- -GCUccUGGACG------UGUGCGUGGa-GACCu -5'
6674 3' -57.7 NC_001847.1 + 55035 0.74 0.364697
Target:  5'- aCGuGGGCCUGCuCcCGCACCUCaaGGAg -3'
miRNA:   3'- -GCuCCUGGACGuGuGCGUGGAGa-CCU- -5'
6674 3' -57.7 NC_001847.1 + 56148 0.73 0.414781
Target:  5'- gCGGGGcucuACC-GCACGgGCACCUCUGuGAa -3'
miRNA:   3'- -GCUCC----UGGaCGUGUgCGUGGAGAC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.