miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 14451 0.7 0.586274
Target:  5'- cCGGGGugCgcgGC-CGCG-GCCUCUGGGu -3'
miRNA:   3'- -GCUCCugGa--CGuGUGCgUGGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 53383 0.7 0.586274
Target:  5'- gCGAGcGcGCCUGCcgaguuuuuuGCGCGCACCauggggCUGGAg -3'
miRNA:   3'- -GCUC-C-UGGACG----------UGUGCGUGGa-----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 124923 0.7 0.586274
Target:  5'- cCGGGGGCgacaGCGgGCGCGCC-CUGGGc -3'
miRNA:   3'- -GCUCCUGga--CGUgUGCGUGGaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 117706 0.7 0.616765
Target:  5'- cCGAGGGCgUGUACACuugGCGCCgcgacaUGGGc -3'
miRNA:   3'- -GCUCCUGgACGUGUG---CGUGGag----ACCU- -5'
6674 3' -57.7 NC_001847.1 + 49998 0.7 0.616765
Target:  5'- aGAGGAgCCcGCGCGCcCACCgccugCUGGGc -3'
miRNA:   3'- gCUCCU-GGaCGUGUGcGUGGa----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 106109 0.69 0.637163
Target:  5'- aCGucuGCCgGCGCGCGCGgCUCUGGGc -3'
miRNA:   3'- -GCuccUGGaCGUGUGCGUgGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 33859 0.69 0.637163
Target:  5'- aGAGGA-CUGCGCGCGCuuCUUgcaGGAg -3'
miRNA:   3'- gCUCCUgGACGUGUGCGugGAGa--CCU- -5'
6674 3' -57.7 NC_001847.1 + 36266 0.69 0.637163
Target:  5'- --uGGGCCgcccagGCGCACGCGCCcuUCcgGGAu -3'
miRNA:   3'- gcuCCUGGa-----CGUGUGCGUGG--AGa-CCU- -5'
6674 3' -57.7 NC_001847.1 + 90043 0.69 0.637163
Target:  5'- uCGAGGGCCUGUuCACGCAUgccguUUCgUGGu -3'
miRNA:   3'- -GCUCCUGGACGuGUGCGUG-----GAG-ACCu -5'
6674 3' -57.7 NC_001847.1 + 33792 0.69 0.637163
Target:  5'- uCGcGGGgCUGCGCGCgGCGCCcggcgcgCUGGAg -3'
miRNA:   3'- -GCuCCUgGACGUGUG-CGUGGa------GACCU- -5'
6674 3' -57.7 NC_001847.1 + 92922 0.69 0.637163
Target:  5'- uCGAGGACCgucacgGCGCcgGCGCAUCgCaGGAg -3'
miRNA:   3'- -GCUCCUGGa-----CGUG--UGCGUGGaGaCCU- -5'
6674 3' -57.7 NC_001847.1 + 117527 0.69 0.637163
Target:  5'- aCGGGGA-CUGCAUG-GUGCCUCUGGc -3'
miRNA:   3'- -GCUCCUgGACGUGUgCGUGGAGACCu -5'
6674 3' -57.7 NC_001847.1 + 102606 0.69 0.647359
Target:  5'- cCGAGGG-CUGCGCGCGCaucGCCUCcGa- -3'
miRNA:   3'- -GCUCCUgGACGUGUGCG---UGGAGaCcu -5'
6674 3' -57.7 NC_001847.1 + 68624 0.69 0.656526
Target:  5'- cCGGGGACCgcaaggcgGCGCGCcuccaccGCGCCgCUGGc -3'
miRNA:   3'- -GCUCCUGGa-------CGUGUG-------CGUGGaGACCu -5'
6674 3' -57.7 NC_001847.1 + 21521 0.69 0.667708
Target:  5'- gCGGGGGCC-GCGCgggccaACGCGCCcaagCUGGc -3'
miRNA:   3'- -GCUCCUGGaCGUG------UGCGUGGa---GACCu -5'
6674 3' -57.7 NC_001847.1 + 66183 0.69 0.667708
Target:  5'- gCGcGGGCC-GCGCugGaCGCCUggCUGGAg -3'
miRNA:   3'- -GCuCCUGGaCGUGugC-GUGGA--GACCU- -5'
6674 3' -57.7 NC_001847.1 + 38218 0.68 0.677844
Target:  5'- gGAGGcCCggGC-CGCGCGCCUCUa-- -3'
miRNA:   3'- gCUCCuGGa-CGuGUGCGUGGAGAccu -5'
6674 3' -57.7 NC_001847.1 + 132889 0.68 0.677844
Target:  5'- cCGAGGGCC-GC-CGCGuCACCUg-GGAg -3'
miRNA:   3'- -GCUCCUGGaCGuGUGC-GUGGAgaCCU- -5'
6674 3' -57.7 NC_001847.1 + 35052 0.68 0.677844
Target:  5'- gCGAcGGGgCUGCugACGUucgccGCCUCgGGAg -3'
miRNA:   3'- -GCU-CCUgGACGugUGCG-----UGGAGaCCU- -5'
6674 3' -57.7 NC_001847.1 + 82271 0.68 0.687942
Target:  5'- ---cGACCUGUACGCGCucggccacGCCUugCUGGAg -3'
miRNA:   3'- gcucCUGGACGUGUGCG--------UGGA--GACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.